rambaut / Seq-GenLinks
Sequence simulator
☆55Updated 11 months ago
Alternatives and similar repositories for Seq-Gen
Users that are interested in Seq-Gen are comparing it to the libraries listed below
Sorting:
- Phylogenetics between and within hosts at once, all along the genome.☆50Updated last year
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 4 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 7 months ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆51Updated 3 years ago
- Genome wide orthology inference and dNdS estimation☆96Updated 4 months ago
- Visualize whole genome alignments as linear maps☆74Updated last week
- Scalable relaxed clock phylogenetic dating☆28Updated 4 months ago
- phylogenetics tools for linux (and other mostly posix compliant) computers☆122Updated last year
- Reconstruction of transmission trees using genomic data☆72Updated 2 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Updated 5 years ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆58Updated 10 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last month
- Munge GenBank files into FASTA and tab-separated metadata☆15Updated 2 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- deep learning prediction of geographic location from individual genome sequences☆52Updated last year
- Rapid analysis and visualization of coronavirus genome variation☆48Updated last week
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆44Updated last year
- ☆43Updated last year
- rhierbaps: R implementation of hierBAPS☆37Updated 4 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆30Updated 4 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Tutorial on Bayesian phylogenetic analysis☆51Updated 8 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- software for UCE (and general) phylogenomics☆87Updated 2 months ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆68Updated 3 years ago