evogytis / balticLinks
baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).
☆112Updated last week
Alternatives and similar repositories for baltic
Users that are interested in baltic are comparing it to the libraries listed below
Sorting:
- Efficient phylogenetic clustering of viral sequences☆89Updated 3 weeks ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆247Updated this week
- SEER, reimplemented in python 🐍🔮☆125Updated 6 months ago
- ☆132Updated last year
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆129Updated last year
- Programmatically interact with the GISAID database.☆78Updated 3 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆124Updated 3 months ago
- Woltka: a versatile meta'omic data classifier☆75Updated 2 months ago
- A console-based alignment viewer☆116Updated 5 months ago
- Global phylogenies of SARS-CoV-2 sequences☆85Updated 2 years ago
- Ultrafast Sample Placement on Existing Trees☆135Updated last week
- Bioinformatics program inStrain☆178Updated 6 months ago
- PASTA (Practical Alignment using SATe and Transitivity)☆95Updated 5 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆79Updated 2 years ago
- PaperBLAST: find papers about a protein or its homologs☆47Updated 2 months ago
- ☆50Updated 3 years ago
- A user-friendly workflow for phylogenomics☆222Updated this week
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆116Updated this week
- Massively parallel phylogenetic placement of genetic sequences☆86Updated 3 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆144Updated this week
- Pipeline for metabolic annotation of microbial genomes☆150Updated 8 months ago
- The Biological Observation Matrix (BIOM) Format Project☆95Updated 3 weeks ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆88Updated 3 months ago
- Alignment viewer for linux terminal☆124Updated 2 months ago
- Repository containing lists of all published ancient metagenomic (and related) samples and libraries☆77Updated this week
- Download files from NCBI Entrez by accession☆130Updated last year
- Vanilla regression methods for microbiome differential abundance analysis☆60Updated 5 years ago
- High-quality circular representations of taxonomic and phylogenetic trees☆105Updated last year
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆171Updated 3 months ago