Alternatives and similar repositories for baltic

Users that are interested in baltic are comparing it to the libraries listed below

• mgalardini / pyseer
  SEER, reimplemented in python 🐍🔮
  ☆130Updated 8 months ago
• neherlab / treetime
  Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
  ☆249Updated last week
• KatyBrown / CIAlign
  ☆133Updated last year
• niemasd / TreeCluster
  Efficient phylogenetic clustering of viral sequences
  ☆91Updated 2 months ago
• jameshadfield / phandango
  an interactive viewer for populations of bacterial genomes linked by a phylogeny
  ☆130Updated last year
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆51Updated 3 weeks ago
• roblanf / sarscov2phylo
  Global phylogenies of SARS-CoV-2 sequences
  ☆85Updated 2 years ago
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆181Updated 9 months ago
• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆51Updated 3 years ago
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆81Updated 2 years ago
• SPAAM-community / AncientMetagenomeDir
  Repository containing lists of all published ancient metagenomic (and related) samples and libraries
  ☆79Updated this week
• AstrobioMike / bit
  Bioinformatics Tools
  ☆90Updated this week
• AllTheBacteria / AllTheBacteria
  Follow up to Grace Blackwell's 661k dataset, for 2023
  ☆130Updated this week
• pierrebarbera / epa-ng
  Massively parallel phylogenetic placement of genetic sequences
  ☆86Updated 3 years ago
• hzi-bifo / traitar
  From genomes to phenotypes: Traitar, the microbial trait analyzer
  ☆65Updated 6 years ago
• yatisht / usher
  Ultrafast Sample Placement on Existing Trees
  ☆139Updated 3 weeks ago
• fhcrc / seqmagick
  An imagemagick-like frontend to Biopython SeqIO
  ☆117Updated last year
• arpcard / amr_curation
  A public repository for collective curation of antimicrobial resistance (AMR) genes and mutations. Submit, discuss, and resolve AMR curat…
  ☆63Updated 4 months ago
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆134Updated last year
• W-L / ProblematicSites_SARS-CoV2
  ☆50Updated 3 years ago
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆159Updated 7 months ago
• Mykrobe-tools / mykrobe
  Antibiotic resistance prediction in minutes
  ☆114Updated last year
• lskatz / awesome-bioinformatics-education
  resources for bioinformatics education
  ☆101Updated 8 months ago
• Wytamma / GISAIDR
  Programmatically interact with the GISAID database.
  ☆80Updated 6 months ago
• husonlab / megan-ce
  MEGAN Community Edition
  ☆72Updated last year
• biobakery / graphlan
  High-quality circular representations of taxonomic and phylogenetic trees
  ☆106Updated last year
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆125Updated 2 weeks ago
• arvestad / alv
  A console-based alignment viewer
  ☆118Updated 7 months ago
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆115Updated 2 weeks ago
• qiyunzhu / woltka
  Woltka: a versatile meta'omic data classifier
  ☆76Updated 5 months ago