quadbio / scRNAseq_analysis_vignetteLinks
Tutorial for scRNA-seq data analysis beginners using R
☆208Updated 4 months ago
Alternatives and similar repositories for scRNAseq_analysis_vignette
Users that are interested in scRNAseq_analysis_vignette are comparing it to the libraries listed below
Sorting:
- Single cell RNA sequencing analysis course☆220Updated 3 months ago
- ☆271Updated 8 months ago
- ☆247Updated last year
- my notes for scATACseq analysis☆128Updated last year
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆268Updated this week
- Analysis of single cell RNA-seq data course☆142Updated 2 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆289Updated 2 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- A package to help convert different single-cell data formats to each other☆434Updated last year
- A tool for detecting somatic variants in single cell data☆211Updated 10 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆230Updated 2 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆300Updated 5 years ago
- Community-provided extensions to Seurat☆340Updated 8 months ago
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…☆174Updated this week
- Single-cell Transcriptome and Regulome Analysis Pipeline☆285Updated 2 years ago
- Interpretation of cell states using reference single-cell maps☆284Updated 2 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆382Updated 2 weeks ago
- Scissor package☆226Updated last year
- Cell types enrichment analysis☆198Updated last year
- ☆173Updated 2 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆231Updated 6 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.☆252Updated 2 months ago
- Single RNA-seq data analysis with R (Finland, May, 2019)☆226Updated 3 years ago
- reticulate-free single cell format conversion☆178Updated last week
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆424Updated 5 months ago
- ☆356Updated 3 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆206Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆417Updated last week
- I redo the ScRNA analysis in the paper of Wang et al 2020, Nat Comm. Here's my modified script for Helen He Zhu github (https://github.co…☆12Updated 3 years ago