quadbio / scRNAseq_analysis_vignette
Tutorial for scRNA-seq data analysis beginners using R
☆180Updated last week
Alternatives and similar repositories for scRNAseq_analysis_vignette:
Users that are interested in scRNAseq_analysis_vignette are comparing it to the libraries listed below
- Single cell RNA sequencing analysis course☆204Updated this week
- Analysis of single cell RNA-seq data course☆131Updated 2 years ago
- my notes for scATACseq analysis☆122Updated 10 months ago
- A package to help convert different single-cell data formats to each other☆411Updated last year
- ☆255Updated 4 months ago
- ☆226Updated 8 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆136Updated 3 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆266Updated 2 years ago
- Intro to ChIPseq using HPC☆299Updated 2 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆286Updated 4 years ago
- This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset☆146Updated 4 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆244Updated this week
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆205Updated last month
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆151Updated 2 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆313Updated last year
- A tool for detecting somatic variants in single cell data☆192Updated 5 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆278Updated 2 years ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆456Updated 9 months ago
- Scanpy Tutorials.☆205Updated this week
- Scissor package☆208Updated 10 months ago
- tools and notes for spatial omics☆271Updated 2 weeks ago
- R package for detecting doublets in single-cell RNA sequencing data☆446Updated this week
- scDIOR: Single cell data IO softwaRe☆140Updated 3 years ago
- Community-provided extensions to Seurat☆323Updated 3 months ago
- scATAC-seq data analysis tools and papers☆102Updated last year
- ☆87Updated last month
- High dimensional weighted gene co-expression network analysis☆382Updated this week
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆269Updated 5 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆310Updated 7 months ago