Alternatives and similar repositories for scRNAseq_analysis_vignette

Users that are interested in scRNAseq_analysis_vignette are comparing it to the libraries listed below

• IanevskiAleksandr / sc-type
  ☆285Updated last year
• navinlabcode / copykat
  ☆268Updated 3 months ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆311Updated 3 years ago
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆133Updated last year
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆236Updated 3 weeks ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆287Updated this week
• satijalab / seurat-wrappers
  Community-provided extensions to Seurat
  ☆355Updated this week
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆320Updated 5 years ago
• huayc09 / SeuratExtend
  ☆202Updated last month
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆452Updated last year
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆161Updated 3 years ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆237Updated 2 years ago
• neurorestore / Libra
  ☆181Updated 8 months ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆140Updated 4 years ago
• welch-lab / liger
  R package for integrating and analyzing multiple single-cell datasets
  ☆425Updated last month
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆300Updated 2 years ago
• pwwang / scplotter
  scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…
  ☆289Updated last week
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆215Updated last year
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆206Updated last week
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆309Updated last month
• r3fang / SnapATAC
  Analysis Pipeline for Single Cell ATAC-seq
  ☆322Updated 2 years ago
• mdozmorov / scATAC-seq_notes
  scATAC-seq data analysis tools and papers
  ☆128Updated 7 months ago
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆362Updated last week
• Teichlab / cellphonedb
  ☆358Updated 4 years ago
• IOBR / IOBR
  IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
  ☆273Updated last month
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆309Updated 3 months ago
• GreenleafLab / ArchR
  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
  ☆444Updated 11 months ago
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆171Updated 3 years ago
• smorabit / hdWGCNA
  High dimensional weighted gene co-expression network analysis
  ☆465Updated 3 weeks ago
• broadinstitute / CellBender
  CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
  ☆375Updated 6 months ago