Tutorial for scRNA-seq data analysis beginners using R
☆256Mar 5, 2025Updated last year
Alternatives and similar repositories for scRNAseq_analysis_vignette
Users that are interested in scRNAseq_analysis_vignette are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆78Apr 16, 2026Updated 2 weeks ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆48Mar 1, 2024Updated 2 years ago
- ☆659Mar 13, 2026Updated last month
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆297Updated this week
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆40Mar 31, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆41Oct 16, 2024Updated last year
- Reusable scripts and functions archive for the paper "Organoid single-cell genomic atlas uncovers human-specific features of brain develo…☆39Aug 2, 2021Updated 4 years ago
- Single cell RNA sequencing analysis course☆242Updated this week
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 4 years ago
- scRNAseq analysis notes from Ming Tang☆802Dec 2, 2024Updated last year
- ☆294Nov 10, 2024Updated last year
- Repository detailing updated allowlisting and clonal analysis workflow☆10Feb 1, 2025Updated last year
- Scripts to install as a Bioconda package for making workflows☆18Sep 15, 2024Updated last year
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,718Apr 13, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆27May 12, 2020Updated 5 years ago
- Easy single cell analysis platform for enrichment☆223Apr 3, 2026Updated 3 weeks ago
- recipes that save time☆148Feb 11, 2026Updated 2 months ago
- Community-provided extensions to Seurat☆361Feb 17, 2026Updated 2 months ago
- Multiome GRN inference.☆135Apr 10, 2026Updated 3 weeks ago
- ☆74Aug 16, 2022Updated 3 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆31Aug 8, 2023Updated 2 years ago
- Step-by-step analysis pipeline for RNA-seq data☆167Sep 5, 2023Updated 2 years ago
- ☆18Oct 4, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- CellRank: dynamics from multi-view single-cell data☆443Apr 24, 2026Updated last week
- A package to help convert different single-cell data formats to each other☆465Feb 20, 2026Updated 2 months ago
- A list of scRNA-seq analysis tools☆787Updated this week
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 6 years ago
- scRNA analysis of public dataset on bladder cancer☆20Dec 12, 2025Updated 4 months ago
- Single-Cell Analysis of Immune Cells from Renal Clear Cell Carcinoma☆21Aug 15, 2021Updated 4 years ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆642Mar 11, 2026Updated last month
- Human cortical cell types☆25Aug 21, 2019Updated 6 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A guide for analyzing single-cell RNA-seq data using the R package Seurat. Go from raw data to cell clustering, identifying cell types, c…☆29Feb 19, 2020Updated 6 years ago
- https://www.sc-best-practices.org☆1,201Updated this week
- A end-to-end scRNA-seq analysis pipeline for cross-group comparison☆19May 18, 2025Updated 11 months ago
- ☆31Apr 9, 2022Updated 4 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆141Mar 13, 2026Updated last month
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆323Nov 1, 2022Updated 3 years ago
- Seurat meets tidyverse. The best of both worlds.☆166Mar 3, 2026Updated last month