Alternatives and similar repositories for ivPerturbSeq

Users that are interested in ivPerturbSeq are comparing it to the libraries listed below

• nghiavtr / SCmut
  ☆33Updated 6 years ago
• McGranahanLab / TcellExTRECT
  ☆47Updated 8 months ago
• wzthu / esATAC
  Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis
  ☆23Updated 3 years ago
• shendurelab / single-cell-ko-screens
  Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…
  ☆26Updated 3 years ago
• morris-lab / BiddyetalWorkflow
  This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.
  ☆32Updated last year
• jdekanter / CHETAH
  scRNA-seq cell type identification
  ☆43Updated 5 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• cole-trapnell-lab / cicero-release
  ☆59Updated last year
• UPSUTER / GEMLI
  ☆32Updated 7 months ago
• cole-trapnell-lab / monocle2-rge-paper
  Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)
  ☆29Updated 5 years ago
• liulab-dfci / lisa2
  ☆30Updated 2 years ago
• fmicompbio / monaLisa
  binned motif enrichment analysis and visualisation
  ☆41Updated this week
• weililab / scMAGeCK
  The R Bioconductor package for scMAGeCK.
  ☆13Updated last year
• statgen / popscle
  A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…
  ☆57Updated 4 years ago
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆43Updated 4 years ago
• dbrg77 / plate_scATAC-seq
  A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method
  ☆42Updated 4 years ago
• shendurelab / mouse-atac
  Repo for website and other code for mouse sci-ATAC-seq project
  ☆28Updated 4 years ago
• satijalab / Integration2019
  ☆17Updated 6 years ago
• lanagarmire / SSrGE
  ☆34Updated 6 years ago
• tanlabcode / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆24Updated 11 months ago
• wenweixiong / MARVEL
  ☆51Updated last year
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆36Updated 6 years ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆45Updated 5 years ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆46Updated last year
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆69Updated 5 years ago
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆51Updated 2 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆46Updated last year
• scCOVID-19 / COVIDPBMC
  Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
  ☆41Updated 3 years ago
• prabhakarlab / RCAv2
  R package for robust clustering of single cell RNA sequencing data
  ☆35Updated last year