Alternatives and similar repositories for KEGGREST

Users that are interested in KEGGREST are comparing it to the libraries listed below

• JCVenterInstitute / PanGenomePipeline
  PanGenomePipeline
  ☆16Updated last year
• BenBeresfordJones / MGBC
  The Mouse Gastrointestinal Bacteria Catalogue
  ☆15Updated 3 years ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆32Updated last year
• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆25Updated 2 years ago
• Gabaldonlab / EvolClust
  Evolcust retrieves groups of genes that appear clustered together in groups of species
  ☆16Updated 2 years ago
• raeslab / GMMs
  A manually curated database of human gut metabolic modules.
  ☆18Updated 6 years ago
• Accio / KEGGgraph
  The KEGGgraph package to parse KEGG pathways in R into graph objects
  ☆13Updated last month
• LKremer / showTree
  showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
  ☆30Updated 6 years ago
• gregpoore / tcga_rebuttal
  Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
  ☆26Updated last year
• lozuponelab / AMON
  Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…
  ☆21Updated last year
• qunfengdong / MicroGMT
  Mutation tracker for microbial genomes
  ☆15Updated 4 years ago
• mocat2 / mocat2
  Latest MOCAT2 version
  ☆19Updated 4 years ago
• SilasK / ipath3
  Python wrapper for ipath3
  ☆10Updated last year
• kaanb93 / q2-krona
  Implementation of Krona to QIIME2
  ☆16Updated last year
• tillrobin / iMGMC
  Repository of the integrated mouse gut metagenomic catalog
  ☆20Updated 3 years ago
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated 9 months ago
• price0416 / DEvis
  DEvis: an R package for aggregation and visualization of differential expression data
  ☆20Updated 4 years ago
• saezlab / flop
  FunctionaL Omics Processing platform
  ☆13Updated 10 months ago
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆23Updated last year
• peng-ye / MetaPGN
  A pipeline for construction and graphical visualization of annotated pangenome networks.
  ☆17Updated 6 years ago
• slimsuite / SLiMSuite
  Open source short linear motif discovery and sequence analysis
  ☆24Updated 8 months ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated last month
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆22Updated 7 months ago
• FischbachLab / ninjaMap
  Compute strain abundance in a defined microbial community
  ☆10Updated last year
• fomightez / sequencework
  programs and scripts, mainly python, for analyses related to nucleic or protein sequences
  ☆24Updated 2 months ago
• Guannan-Wang / GOMCL
  GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
  ☆21Updated last year
• mohimanilab / MetaMiner
  a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs
  ☆12Updated 3 years ago
• datapplab / pathview
  pathway based data integration and visualization
  ☆41Updated 2 months ago
• AstraZeneca / detectIS
  A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data
  ☆12Updated 2 years ago
• appris / appris
  Annotating principal splice isoforms
  ☆14Updated 8 months ago