The R Bioconductor package for scMAGeCK.
☆14Jul 10, 2026Updated 3 months ago
Alternatives and similar repositories for scMAGeCK
Users that are interested in scMAGeCK are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆40Aug 31, 2026Updated last month
- ☆15May 16, 2019Updated 7 years ago
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆35Feb 22, 2018Updated 8 years ago
- Tutorials for Squidpy☆35Jul 10, 2026Updated 2 months ago
- Core utilities for single-cell RNA-seq☆13Jun 16, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- pipelines to process scRNA-seq data☆12Jan 11, 2021Updated 5 years ago
- ☆17Feb 12, 2026Updated 7 months ago
- ☆30Mar 12, 2026Updated 6 months ago
- Tutorial for using the perturbseq library to load and manipulate experiments☆25Aug 7, 2019Updated 7 years ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆25Jul 6, 2023Updated 3 years ago
- Computational pipeline to process EasySci-RNA data.☆23Jan 17, 2024Updated 2 years ago
- Rapid RNA-seq pipeline using AWS lambda functions for alignment☆13Mar 22, 2019Updated 7 years ago
- Inference of gene dependency from RNAi screening datasets.☆19Apr 9, 2020Updated 6 years ago
- ☆10Sep 26, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Capybara: A computational tool to measure cell identity and fate transitions☆64May 23, 2022Updated 4 years ago
- Analysis on stop reasons☆10Jun 17, 2024Updated 2 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆44Jun 18, 2023Updated 3 years ago
- Accurate and fast cell marker gene identification with COSG☆60Sep 4, 2026Updated last month
- Reanalysis of the repressive capacity of promoter DNA methylation☆11Feb 14, 2019Updated 7 years ago
- ☆62Dec 27, 2023Updated 2 years ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆42Dec 16, 2020Updated 5 years ago
- A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential anal…☆18Mar 3, 2023Updated 3 years ago
- R package CoxBoost☆11Sep 24, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Multichannel Igor Electrophysiology Suite☆30Updated this week
- Project bulk/single-cell RNA-seq data to given LSI space☆12Jan 17, 2022Updated 4 years ago
- ☆12Feb 27, 2019Updated 7 years ago
- ☆12May 4, 2021Updated 5 years ago
- Quickomics: exploring omics data in an intuitive, interactive and informative manner. Bioinformatics. 2021 Apr 26:btab255.☆43Sep 29, 2026Updated last week
- A Tidy Framework to Hack Gene Expression Signatures☆20Apr 20, 2025Updated last year
- R package for transfer learning of single-cell RNA-seq denoising☆31Jun 14, 2022Updated 4 years ago
- Lifterover copy number segments in whole☆25Feb 6, 2024Updated 2 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆45Apr 14, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- Tools for assessing clustering robustness☆34Sep 27, 2026Updated last week
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆52Mar 5, 2024Updated 2 years ago
- ☆54Jan 16, 2020Updated 6 years ago
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆36Oct 18, 2024Updated last year
- ☆12Sep 10, 2026Updated 3 weeks ago
- Scripts and notebooks for models that enable better causal inferences in psychological sciences☆11Dec 24, 2024Updated last year