ebi-gene-expression-group / scanpy-scriptsLinks
Scripts for using scanpy
☆36Updated 3 months ago
Alternatives and similar repositories for scanpy-scripts
Users that are interested in scanpy-scripts are comparing it to the libraries listed below
Sorting:
- ☆35Updated 3 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated 2 years ago
- ☆59Updated 9 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆50Updated 4 years ago
- ☆34Updated 6 years ago
- scWGCNA☆61Updated 2 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- Single Cell Epigenome-based Inference of Activity☆19Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- ☆32Updated 6 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- ☆41Updated 4 years ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆21Updated 2 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated 2 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 3 years ago
- Code repository for the snRNA-seq cross-tissue atlas project☆20Updated 3 years ago
- ☆35Updated 9 months ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- ☆32Updated 5 months ago
- ☆41Updated last week
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last year
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago