ebi-gene-expression-group / scanpy-scriptsLinks
Scripts for using scanpy
☆38Updated 2 months ago
Alternatives and similar repositories for scanpy-scripts
Users that are interested in scanpy-scripts are comparing it to the libraries listed below
Sorting:
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated last week
- A repository of pipelines for single-cell data in Nextflow DSL2☆79Updated 2 years ago
- ☆34Updated 6 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆56Updated last year
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- ☆37Updated 9 months ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆52Updated 3 weeks ago
- ☆59Updated last year
- Toolkit for single-cell DNA methylation analysis.☆45Updated 2 weeks ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- A shell to facilitate loading / running CIBERSORT software in structured environments☆26Updated 7 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Mapping pipeline for snmC-seq based technologies.☆20Updated 2 years ago
- ☆44Updated last year
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- A python package for chromVAR☆31Updated 2 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 2 weeks ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 7 months ago
- ☆52Updated last year
- ☆39Updated 4 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 8 months ago
- Geometry-preserving random sampling☆95Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated 2 weeks ago
- scWGCNA☆61Updated 3 years ago
- ☆32Updated 11 months ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆78Updated 2 weeks ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Updated 5 years ago