MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via a multi-resolution perspective.
☆24Aug 15, 2023Updated 2 years ago
Alternatives and similar repositories for MultiK
Users that are interested in MultiK are comparing it to the libraries listed below
Sorting:
- a deep generative model for single-cell survival analysis☆16Dec 2, 2025Updated 3 months ago
- A clusterability measure for scRNA-seq data.☆18Feb 2, 2022Updated 4 years ago
- An R framework for choosing clustering parameters in scRNA-seq analysis pipelines☆36Jun 12, 2020Updated 5 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Sep 5, 2022Updated 3 years ago
- ☆17Jul 8, 2024Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated last month
- Tools for assessing clustering robustness☆30Updated this week
- R package for Protein activity analysis of single-cell RNAseq.☆86Dec 15, 2022Updated 3 years ago
- Ordering gene-expression and functional events in single-cell experiments☆29Mar 7, 2026Updated 2 weeks ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆30Aug 16, 2021Updated 4 years ago
- Implementation of MaSigPro for scRNA-Seq Data☆19Jul 31, 2024Updated last year
- A tool for semi-automatic cell type harmonization and integration☆119Mar 9, 2026Updated last week
- scWGCNA☆63Nov 8, 2022Updated 3 years ago
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆14Jan 21, 2025Updated last year
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆40Mar 6, 2024Updated 2 years ago
- ☆12Nov 7, 2022Updated 3 years ago
- Cell type prioritization in single-cell data☆138Oct 23, 2024Updated last year
- Network-based module discovery algorithm with high rate of empirically-validated term calls☆14Oct 22, 2023Updated 2 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆39Aug 23, 2023Updated 2 years ago
- Miscellaneous functions commonly used by 'YuLab-SMU'.☆38Feb 11, 2026Updated last month
- ☆45Jan 11, 2024Updated 2 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆123Sep 7, 2024Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆182Aug 12, 2025Updated 7 months ago
- ☆19May 5, 2021Updated 4 years ago
- Biology-centered data-driven quality control for scRNA-seq☆19May 22, 2023Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- Methods to discover gene programs on single-cell data☆176Sep 26, 2025Updated 5 months ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆44Oct 10, 2025Updated 5 months ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆17Jul 19, 2021Updated 4 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆479Apr 5, 2024Updated last year
- A package to help convert different single-cell data formats to each other☆460Feb 20, 2026Updated last month
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Mar 30, 2024Updated last year
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Aug 29, 2023Updated 2 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆26May 12, 2020Updated 5 years ago
- A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis☆34Sep 14, 2024Updated last year
- Critical downstream analysis steps for single-cell RNA sequencing data☆13Feb 21, 2021Updated 5 years ago
- ☆21Aug 20, 2024Updated last year