perou-lab / MultiK
MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via a multi-resolution perspective.
☆21Updated last year
Related projects ⓘ
Alternatives and complementary repositories for MultiK
- Aligning gene expression trajectories of single-cell reference and query systems☆46Updated last month
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆25Updated last month
- Inferring CNV data from single cell ATAC seq☆22Updated 9 months ago
- Functions for single cell data analysis☆27Updated 3 years ago
- ☆31Updated 8 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆46Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 6 months ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆13Updated last year
- Code used in article: Tracing cell-type evolution by cross-species comparison of cell atlases☆18Updated 4 years ago
- ☆22Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated 10 months ago
- ☆19Updated 7 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last month
- ☆34Updated 2 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆26Updated this week
- Accurate and fast cell marker gene identification with COSG☆38Updated last year
- ☆29Updated 3 years ago
- R package of CSOmap(developing☆14Updated 2 years ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆26Updated 2 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆12Updated 3 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆20Updated 2 weeks ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆38Updated last year
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago
- Single cell RNA-seq analysis bundle☆33Updated 5 years ago
- SCDC☆42Updated last year
- A pipeline for scRNA-seq data analysis☆12Updated 10 months ago
- ☆16Updated 8 months ago
- The codes and files for the study of subsolid nodules (SSN).☆13Updated 4 years ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆15Updated 6 months ago