Alternatives and similar repositories for single-cell-papers-with-code:

Users that are interested in single-cell-papers-with-code are comparing it to the libraries listed below

• Starlitnightly / single_cell_tutorial
  单细胞分析的中文pipeline
  ☆187Updated 10 months ago
• zhanghao-njmu / SCP
  An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
  ☆438Updated 8 months ago
• junjunlab / scRNAtoolVis
  Useful functions to make your scRNA-seq plot more cool!
  ☆315Updated 3 weeks ago
• jmzeng1314 / scRNA_smart_seq2
  ☆302Updated 5 years ago
• junjunlab / ClusterGVis
  One-step to Cluster and Visualize Gene Expression Matrix
  ☆274Updated this week
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆129Updated 2 years ago
• jmzeng1314 / scRNA_10X
  ☆93Updated 5 years ago
• IOBR / IOBR
  IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
  ☆225Updated last month
• czbiohub-sf / scell_lung_adenocarcinoma
  This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset
  ☆145Updated 4 years ago
• WeiSong-bio / jmzeng1314-5years-summarize
  ☆117Updated 5 years ago
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆202Updated 4 months ago
• jinworks / CellChat
  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
  ☆346Updated 2 months ago
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆282Updated 4 years ago
• navinlabcode / copykat
  ☆221Updated 7 months ago
• quadbio / scRNAseq_analysis_vignette
  Tutorial for scRNA-seq data analysis beginners using R
  ☆173Updated 9 months ago
• IanevskiAleksandr / sc-type
  ☆253Updated 3 months ago
• jmzeng1314 / my_WGCNA
  ☆274Updated 5 years ago
• chris-mcginnis-ucsf / DoubletFinder
  R package for detecting doublets in single-cell RNA sequencing data
  ☆439Updated last week
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆405Updated 11 months ago
• junjunlab / GseaVis
  An implement R package to visualize GSEA results
  ☆144Updated last month
• saeyslab / nichenetr
  NicheNet: predict active ligand-target links between interacting cells
  ☆513Updated 5 months ago
• Teichlab / cellphonedb
  ☆353Updated 3 years ago
• cole-trapnell-lab / monocle3
  ☆363Updated last month
• ixxmu / mp_duty
  抓取网络文章到github issues保存
  ☆135Updated this week
• jmzeng1314 / methy_array
  ☆96Updated 4 years ago
• hbctraining / scRNA-seq_online
  ☆560Updated 3 weeks ago
• jmzeng1314 / AnnoProbe
  ☆103Updated 2 years ago
• satijalab / seurat-wrappers
  Community-provided extensions to Seurat
  ☆320Updated 2 months ago
• ayueme / easyTCGA
  Make TCGA download and prepare easy!
  ☆118Updated 9 months ago
• jmzeng1314 / tcga_example
  ☆278Updated 5 years ago