Alternatives and similar repositories for single-cell-papers-with-code:

Users that are interested in single-cell-papers-with-code are comparing it to the libraries listed below

• Starlitnightly / single_cell_tutorial
  单细胞分析的中文pipeline
  ☆180Updated 9 months ago
• zhanghao-njmu / SCP
  An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
  ☆424Updated 7 months ago
• jmzeng1314 / scRNA_smart_seq2
  ☆301Updated 5 years ago
• junjunlab / scRNAtoolVis
  Useful functions to make your scRNA-seq plot more cool!
  ☆304Updated 2 months ago
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆125Updated 2 years ago
• junjunlab / ClusterGVis
  One-step to Cluster and Visualize Gene Expression Matrix
  ☆267Updated last month
• IOBR / IOBR
  IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
  ☆222Updated last week
• WeiSong-bio / jmzeng1314-5years-summarize
  ☆117Updated 5 years ago
• czbiohub-sf / scell_lung_adenocarcinoma
  This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset
  ☆145Updated 4 years ago
• jmzeng1314 / scRNA_10X
  ☆92Updated 5 years ago
• navinlabcode / copykat
  ☆219Updated 6 months ago
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆200Updated 3 months ago
• junjunlab / GseaVis
  An implement R package to visualize GSEA results
  ☆142Updated this week
• jinworks / CellChat
  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
  ☆329Updated last month
• chris-mcginnis-ucsf / DoubletFinder
  R package for detecting doublets in single-cell RNA sequencing data
  ☆433Updated 8 months ago
• quadbio / scRNAseq_analysis_vignette
  Tutorial for scRNA-seq data analysis beginners using R
  ☆171Updated 9 months ago
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆281Updated 4 years ago
• jmzeng1314 / my_WGCNA
  ☆274Updated 5 years ago
• jmzeng1314 / NGS-pipeline
  By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
  ☆320Updated 6 years ago
• STOmics / Stereopy
  A toolkit of spatial transcriptomic analysis.
  ☆214Updated this week
• jmzeng1314 / my-R
  a small collection for my R scripts
  ☆165Updated 5 years ago
• jmzeng1314 / tcga_example
  ☆278Updated 5 years ago
• ixxmu / mp_duty
  抓取网络文章到github issues保存
  ☆133Updated this week
• IanevskiAleksandr / sc-type
  ☆249Updated 2 months ago
• jmzeng1314 / methy_array
  ☆96Updated 4 years ago
• Teichlab / cellphonedb
  ☆350Updated 3 years ago
• jmzeng1314 / AnnoProbe
  ☆102Updated 2 years ago
• hbctraining / scRNA-seq_online
  ☆544Updated this week
• hbctraining / DGE_workshop_salmon_online
  ☆186Updated 2 months ago
• saeyslab / nichenetr
  NicheNet: predict active ligand-target links between interacting cells
  ☆506Updated 4 months ago