Alternatives and similar repositories for single-cell-papers-with-code

Users that are interested in single-cell-papers-with-code are comparing it to the libraries listed below

• Starlitnightly / single_cell_tutorial
  单细胞分析的中文pipeline
  ☆265Updated last year
• junjunlab / scRNAtoolVis
  Useful functions to make your scRNA-seq plot more cool!
  ☆369Updated last week
• junjunlab / ClusterGVis
  One-step to Cluster and Visualize Gene Expression Matrix
  ☆336Updated last month
• jmzeng1314 / scRNA_smart_seq2
  ☆317Updated 6 years ago
• IOBR / IOBR
  IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
  ☆266Updated this week
• zhanghao-njmu / SCP
  An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
  ☆609Updated last month
• quadbio / scRNAseq_analysis_vignette
  Tutorial for scRNA-seq data analysis beginners using R
  ☆234Updated 9 months ago
• ixxmu / mp_duty
  抓取网络文章到github issues保存
  ☆178Updated this week
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆159Updated 3 years ago
• jmzeng1314 / scRNA_10X
  ☆94Updated 6 years ago
• junjunlab / GseaVis
  An implement R package to visualize GSEA results
  ☆202Updated 3 weeks ago
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆450Updated last year
• jmzeng1314 / my_WGCNA
  ☆293Updated 6 years ago
• jinworks / CellChat
  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
  ☆511Updated 2 months ago
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆229Updated last month
• IanevskiAleksandr / sc-type
  ☆282Updated last year
• navinlabcode / copykat
  ☆260Updated 2 months ago
• Teichlab / cellphonedb
  ☆359Updated 4 years ago
• jmzeng1314 / tcga_example
  ☆294Updated 6 years ago
• sunduanchen / Scissor
  Scissor package
  ☆245Updated last year
• WeiSong-bio / jmzeng1314-5years-summarize
  ☆121Updated 6 years ago
• satijalab / seurat-wrappers
  Community-provided extensions to Seurat
  ☆353Updated last year
• Lindsey-LCFoong / Analysing-10X-ScRNA-data-Wang-et-al-2020-Nat-Commun-
  I redo the ScRNA analysis in the paper of Wang et al 2020, Nat Comm. Here's my modified script for Helen He Zhu github (https://github.co…
  ☆12Updated 4 years ago
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆315Updated 5 years ago
• aertslab / SCENIC
  SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
  ☆474Updated last year
• chris-mcginnis-ucsf / DoubletFinder
  R package for detecting doublets in single-cell RNA sequencing data
  ☆515Updated 9 months ago
• omnideconv / immunedeconv
  A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…
  ☆512Updated last month
• pwwang / scplotter
  scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…
  ☆281Updated last month
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆297Updated 2 years ago
• czbiohub-sf / scell_lung_adenocarcinoma
  This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset
  ☆154Updated 4 years ago