CebolaLab / RNA-seqLinks
Step-by-step analysis pipeline for RNA-seq data
☆140Updated last year
Alternatives and similar repositories for RNA-seq
Users that are interested in RNA-seq are comparing it to the libraries listed below
Sorting:
- Introduction to bulk RNA-seq☆120Updated 3 months ago
- ☆94Updated 3 months ago
- ☆205Updated last week
- ☆272Updated 9 months ago
- ATAC-seq peak-calling and QC analysis pipeline☆208Updated last month
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆170Updated 4 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆222Updated 2 months ago
- 🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.☆185Updated 4 years ago
- A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…☆93Updated 5 years ago
- Analysis pipeline for ATAC-seq data☆71Updated last year
- A collection of scripts and notes related to genomics and bioinformatics☆216Updated last month
- Application for making ENCODE Blacklists☆317Updated 4 years ago
- Tool for plotting sequencing data along genomic coordinates.☆308Updated 2 months ago
- Intro to ChIPseq using HPC☆310Updated 2 years ago
- Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.☆207Updated last month
- Analysis of single cell RNA-seq data course☆144Updated 3 years ago
- ☆137Updated 6 years ago
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.☆203Updated 7 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆259Updated 6 months ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆166Updated 3 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆153Updated last year
- A DIY guide to gene co-expression network analysis☆12Updated 4 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆218Updated last month
- parallel fastq-dump wrapper☆299Updated 2 years ago
- Detecting sites of genomic enrichment☆192Updated 2 years ago
- Check strandedness of RNA-Seq fastq files☆125Updated 2 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆279Updated last year
- RNA-seq workflow using STAR and DESeq2☆344Updated last year
- Download FASTQ files from SRA or ENA repositories.☆340Updated 2 months ago