Step-by-step analysis pipeline for RNA-seq data
☆176Sep 5, 2023Updated 2 years ago
Alternatives and similar repositories for RNA-seq
Users that are interested in RNA-seq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Chromatin ACcessibility and Transcriptomics Unifying Software☆19Oct 25, 2024Updated last year
- Tutorial for scRNA-seq data analysis beginners using R☆273Mar 5, 2025Updated last year
- Differential gene expression analysis on RNA-seq data☆13Apr 26, 2024Updated 2 years ago
- A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…☆128Aug 21, 2020Updated 5 years ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,340Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 7 years ago
- Miscellaneous R script to wrangle data and generate visualizations☆17Aug 14, 2024Updated last year
- Uncovering Amiloride's Mechanisms of Action in Multiple Myeloma: A Bioinformatics Approach☆27Jan 31, 2025Updated last year
- scripts for RNA-Seq analysis☆28Feb 20, 2022Updated 4 years ago
- ☆26Jan 9, 2024Updated 2 years ago
- ☆12Apr 1, 2025Updated last year
- Analysis pipeline for ATAC-seq data☆91Oct 30, 2023Updated 2 years ago
- scRNA analysis of public dataset on bladder cancer☆20Dec 12, 2025Updated 7 months ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆83Apr 16, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- ☆43Oct 16, 2024Updated last year
- Genearlized mapping scripts for RNA-seq and Patch-seq data☆19Sep 29, 2025Updated 9 months ago
- ☆10May 17, 2022Updated 4 years ago
- A repository for setting up a RNAseq workflow☆458Apr 10, 2017Updated 9 years ago
- SCassist : An AI Based Workflow Assistant for Single-Cell Analysis☆33Aug 22, 2025Updated 10 months ago
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 6 months ago
- ☆17Apr 15, 2025Updated last year
- ☆28Jan 25, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Training requirements for joining projects☆87Jul 16, 2024Updated 2 years ago
- ☆14Mar 2, 2020Updated 6 years ago
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Jan 16, 2023Updated 3 years ago
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆14Dec 6, 2021Updated 4 years ago
- ☆20Mar 31, 2024Updated 2 years ago
- FLASH (Fast Length Adjustment of SHort reads); mirror of https://git.code.sf.net/p/flashpage/code☆13Mar 6, 2018Updated 8 years ago
- Scripts for sincle cell multiome analysis☆15Apr 6, 2022Updated 4 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆26Nov 17, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for computing Association Plots☆17Nov 4, 2024Updated last year
- ☆309Nov 10, 2024Updated last year
- Free-access R books for beginners. Welcome to Fork it. Commercial use is forbidden!☆14Sep 16, 2018Updated 7 years ago
- This repo is designed as a step-by-step tutorial to teach RNA-seq analysis☆16Dec 21, 2025Updated 7 months ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆20Jul 26, 2024Updated last year
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆86Jun 4, 2021Updated 5 years ago
- Brendan's skeleton scRNAseq workflow using scran, Seurat, and scClustViz☆11Apr 22, 2020Updated 6 years ago