CebolaLab / RNA-seqLinks
Step-by-step analysis pipeline for RNA-seq data
☆130Updated last year
Alternatives and similar repositories for RNA-seq
Users that are interested in RNA-seq are comparing it to the libraries listed below
Sorting:
- Introduction to bulk RNA-seq☆112Updated 2 months ago
- ☆93Updated 2 months ago
- ATAC-seq peak-calling and QC analysis pipeline☆206Updated this week
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆216Updated 2 weeks ago
- ☆202Updated 3 months ago
- 🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.☆177Updated 4 years ago
- Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.☆201Updated 2 weeks ago
- Analysis pipeline for ATAC-seq data☆63Updated last year
- Tool for plotting sequencing data along genomic coordinates.☆295Updated 2 weeks ago
- Analysis of single cell RNA-seq data course☆140Updated 2 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆151Updated 10 months ago
- ☆138Updated 6 years ago
- Application for making ENCODE Blacklists☆313Updated 4 years ago
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆170Updated 4 years ago
- Intro to ChIPseq using HPC☆309Updated 2 years ago
- A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…☆90Updated 4 years ago
- ☆263Updated 7 months ago
- A short tutorial on how to use RSEM☆137Updated 5 years ago
- A DIY guide to gene co-expression network analysis☆10Updated 3 months ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆163Updated last month
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆254Updated 5 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆216Updated this week
- Check strandedness of RNA-Seq fastq files☆124Updated 2 years ago
- Download FASTQ files from SRA or ENA repositories.☆338Updated 3 weeks ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆211Updated 2 weeks ago
- parallel fastq-dump wrapper☆298Updated 2 years ago
- A collection of scripts and notes related to genomics and bioinformatics☆214Updated 3 months ago
- ☆10Updated last month
- Detecting sites of genomic enrichment☆192Updated 2 years ago
- Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.☆201Updated 7 years ago