CebolaLab / RNA-seq

Related projects ⓘ

Alternatives and complementary repositories for RNA-seq

• CebolaLab / ATAC-seq
  Analysis pipeline for ATAC-seq data
  ☆38Updated last year
• hbctraining / Intro-to-ChIPseq-flipped
  ☆79Updated 4 months ago
• tobiasrausch / ATACseq
  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
  ☆74Updated last year
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆114Updated 2 years ago
• erilu / bulk-rnaseq-analysis
  A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…
  ☆65Updated 4 years ago
• BioOmics / iSeq
  Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
  ☆124Updated this week
• nloyfer / wgbs_tools
  tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
  ☆133Updated last week
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆195Updated 3 months ago
• FredHutch / SEACR
  SEACR: Sparse Enrichment Analysis for CUT&RUN
  ☆102Updated last year
• reskejak / ATAC-seq
  Basic workflow for ATAC-seq analysis
  ☆70Updated 8 months ago
• hbctraining / Intro-to-rnaseq-hpc-salmon-flipped
  Introduction to bulk RNA-seq
  ☆94Updated 2 months ago
• nf-core / cutandrun
  Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …
  ☆80Updated 3 weeks ago
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆139Updated last week
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆88Updated last year
• xryanglab / RiboCode
  release version
  ☆47Updated 2 years ago
• AAlhendi1707 / countToFPKM
  Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
  ☆61Updated 3 years ago
• ENCODE-DCC / rna-seq-pipeline
  ☆141Updated 2 years ago
• harvardinformatics / ATAC-seq
  ☆120Updated 5 years ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆104Updated 3 years ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆167Updated last month
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆138Updated 2 months ago
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆133Updated 4 years ago
• tavareshugo / tutorial_DESeq2_contrasts
  ☆56Updated 6 months ago
• sib-swiss / single-cell-training
  SIB course on single cell transcriptomics by mostly using the Seurat pipeline
  ☆78Updated last week
• QuKunLab / ATAC-pipe
  Analysis pipeline for ATAC-seq Data
  ☆60Updated 3 years ago
• mdozmorov / scATAC-seq_notes
  scATAC-seq data analysis tools and papers
  ☆96Updated last year
• broadinstitute / PhylogicNDT
  ☆70Updated 6 months ago
• JiekaiLab / scTE
  ☆100Updated 6 months ago
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆62Updated 3 months ago
• RabadanLab / arcasHLA
  Fast and accurate in silico inference of HLA genotypes from RNA-seq
  ☆119Updated 2 months ago