NBISweden / workshop-scRNAseqLinks
Single cell RNA sequencing analysis course
☆219Updated 3 months ago
Alternatives and similar repositories for workshop-scRNAseq
Users that are interested in workshop-scRNAseq are comparing it to the libraries listed below
Sorting:
- Analysis of single cell RNA-seq data course☆140Updated 2 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆285Updated 2 years ago
- ☆269Updated 8 months ago
- my notes for scATACseq analysis☆128Updated last year
- Tutorial for scRNA-seq data analysis beginners using R☆206Updated 4 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆299Updated 4 years ago
- Single RNA-seq data analysis with R (Finland, May, 2019)☆226Updated 2 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆204Updated last year
- A package to help convert different single-cell data formats to each other☆433Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆284Updated 2 years ago
- ☆242Updated last year
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆317Updated 2 years ago
- A tool for detecting somatic variants in single cell data☆208Updated 10 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆161Updated 2 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆229Updated 2 years ago
- T/B cell receptor sequencing analysis notes☆259Updated 7 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆289Updated 3 weeks ago
- Interpretation of cell states using reference single-cell maps☆281Updated last month
- A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…☆90Updated 4 years ago
- Cell types enrichment analysis☆198Updated last year
- Bench-marking classification tools for scRNA-seq data☆186Updated 3 years ago
- ☆356Updated 3 years ago
- TCR and BCR assembly from RNA-seq data☆316Updated last week
- scATAC-seq data analysis tools and papers☆112Updated 2 weeks ago
- A toolkit for single-cell immune profiling☆341Updated this week
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…☆168Updated last week
- scDIOR: Single cell data IO softwaRe☆143Updated 3 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆264Updated this week