Alternatives and similar repositories for Intro-to-scRNAseq

Users that are interested in Intro-to-scRNAseq are comparing it to the libraries listed below

• hbctraining / scRNA-seq
  ☆588Updated 4 years ago
• mdozmorov / scRNA-seq_notes
  A list of scRNA-seq analysis tools
  ☆752Updated last month
• zhanghao-njmu / SCP
  An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
  ☆582Updated last year
• hemberg-lab / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆676Updated 3 years ago
• broadinstitute / infercnv
  Inferring CNV from Single-Cell RNA-Seq
  ☆646Updated 9 months ago
• chris-mcginnis-ucsf / DoubletFinder
  R package for detecting doublets in single-cell RNA sequencing data
  ☆504Updated 7 months ago
• saeyslab / nichenetr
  NicheNet: predict active ligand-target links between interacting cells
  ☆586Updated last month
• crazyhottommy / ChIP-seq-analysis
  ChIP-seq analysis notes from Ming Tang
  ☆830Updated last year
• mousepixels / sanbomics_scripts
  scripts and notebooks from sanbomics
  ☆448Updated 11 months ago
• aertslab / pySCENIC
  pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…
  ☆553Updated 4 months ago
• jinworks / CellChat
  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
  ☆490Updated last month
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆485Updated 5 months ago
• omnideconv / immunedeconv
  A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…
  ☆510Updated last week
• aertslab / SCENIC
  SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
  ☆468Updated last year
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆445Updated 8 years ago
• GreenleafLab / ArchR
  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
  ☆436Updated 8 months ago
• hbctraining / DGE_workshop
  ☆401Updated 3 years ago
• cole-trapnell-lab / monocle3
  ☆416Updated last month
• kpatel427 / YouTubeTutorials
  ☆361Updated last year
• crazyhottommy / RNA-seq-analysis
  RNAseq analysis notes from Ming Tang
  ☆1,050Updated 4 years ago
• theislab / scvelo
  RNA Velocity generalized through dynamical modeling
  ☆471Updated 8 months ago
• ventolab / CellphoneDB
  CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
  ☆443Updated 5 months ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆434Updated last year
• Teichlab / cellphonedb
  ☆360Updated 3 years ago
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆445Updated last year
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆316Updated 2 years ago
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆158Updated 3 years ago
• immunogenomics / harmony
  Fast, sensitive and accurate integration of single-cell data with Harmony
  ☆604Updated last month
• genecell / single-cell-papers-with-code
  Papers with code for single cell related papers
  ☆297Updated 2 years ago
• theislab / single-cell-best-practices
  https://www.sc-best-practices.org
  ☆1,048Updated this week