quadbio / scMultiome_analysis_vignetteLinks
Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
☆57Updated last year
Alternatives and similar repositories for scMultiome_analysis_vignette
Users that are interested in scMultiome_analysis_vignette are comparing it to the libraries listed below
Sorting:
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆93Updated 3 years ago
- A tool for semi-automatic cell type harmonization and integration☆106Updated 2 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆104Updated last month
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated last month
- Direct estimation of mean and covariance from single cell RNA seq experiments☆109Updated 3 weeks ago
- ☆107Updated 2 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- Analysis of cell-cell communication at single-cell resolution☆101Updated 8 months ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆82Updated 2 months ago
- R package for pathway analysis in scRNA-seq data☆74Updated 9 months ago
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆92Updated last month
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆105Updated 2 months ago
- SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/☆23Updated 3 years ago
- ☆64Updated last year
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆112Updated 8 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆49Updated 3 years ago
- Analysis pipeline for ATAC-seq data☆60Updated last year
- ☆42Updated 2 years ago
- ☆65Updated 11 months ago
- Spatial transcriptomics of heart tissue☆85Updated last year
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆57Updated last month
- Mollecular Functional Portraits☆40Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆111Updated last month
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆81Updated last year
- Single-cell Lung Cancer Atlas with 1.2M cells☆63Updated 4 months ago
- SCSA: cell type annotation for single-cell RNA-seq data☆90Updated 2 years ago
- ☆76Updated this week
- ☆61Updated 5 years ago