quadbio / scMultiome_analysis_vignetteLinks
Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
☆67Updated last year
Alternatives and similar repositories for scMultiome_analysis_vignette
Users that are interested in scMultiome_analysis_vignette are comparing it to the libraries listed below
Sorting:
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆95Updated 4 years ago
- A tool for semi-automatic cell type harmonization and integration☆111Updated 6 months ago
- ☆44Updated 3 years ago
- ☆73Updated last year
- ☆115Updated last month
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆109Updated 5 months ago
- R package for semi-supervised single-cell data integration☆90Updated last month
- Spatial transcriptomics of heart tissue☆95Updated last year
- AUCell: score single cells with gene regulatory networks☆169Updated last year
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- ☆125Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated last month
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆112Updated last month
- Functional Inference of Gene Regulation☆46Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- ☆57Updated last year
- Methods to compute Local Inverse Simpson's Index (LISI)☆68Updated 4 years ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆114Updated 8 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆117Updated 5 months ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆87Updated 6 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆77Updated 8 months ago
- ☆62Updated 6 years ago
- Single cell RNA-seq analysis bundle☆36Updated 6 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆124Updated 2 months ago