quadbio / scMultiome_analysis_vignetteLinks
Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
☆68Updated last year
Alternatives and similar repositories for scMultiome_analysis_vignette
Users that are interested in scMultiome_analysis_vignette are comparing it to the libraries listed below
Sorting:
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- A tool for semi-automatic cell type harmonization and integration☆115Updated last month
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆110Updated 7 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆113Updated 3 months ago
- ☆78Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆88Updated 8 months ago
- R package for Pathway RespOnsive GENe activity inference☆111Updated 2 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated 2 years ago
- ☆126Updated 3 years ago
- ☆44Updated 3 years ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆97Updated 4 years ago
- ☆59Updated last year
- This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…☆49Updated 2 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆82Updated 10 months ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆53Updated 4 years ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆117Updated last month
- Direct estimation of mean and covariance from single cell RNA seq experiments☆123Updated 7 months ago
- ☆116Updated 3 months ago
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Spatial transcriptomics of heart tissue☆102Updated 2 years ago
- R package to access DoRothEA's regulons☆154Updated last year
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆129Updated last year
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆121Updated last year
- Functional Inference of Gene Regulation☆49Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 10 months ago
- scDIOR: Single cell data IO softwaRe☆150Updated 3 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- ☆74Updated 2 years ago