hbc / knowledgebaseLinks
recipes that save time
☆142Updated 3 weeks ago
Alternatives and similar repositories for knowledgebase
Users that are interested in knowledgebase are comparing it to the libraries listed below
Sorting:
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago
- published papers with a lot of data☆74Updated 5 months ago
- The package wrapping the book, for deployment via the Bioconductor build system.☆90Updated 10 months ago
- Mixed-effect model to test differences in cell type proportions from single-cell data, in R☆111Updated last month
- Interactively analyze single cell genomic data☆183Updated 3 weeks ago
- Simplify functional enrichment results☆118Updated last year
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Updated 5 months ago
- Clone of the Bioconductor repository for the SingleR package.☆195Updated 2 months ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆96Updated 11 months ago
- An R interface to enrichR☆92Updated 7 months ago
- ☆63Updated last year
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆121Updated 5 years ago
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆79Updated 8 years ago
- chromatin Variability Across Regions (of the genome!)☆181Updated last year
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆72Updated last week
- Code and data repository for the 2020 physalia course on single cell RNA sequencing.☆58Updated 5 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆69Updated 3 months ago
- ☆72Updated 3 years ago
- Tools for single-cell data processing☆126Updated last year
- Course material in notebook format for learning about single cell bioinformatics methods☆99Updated 9 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆114Updated 2 months ago
- Easy single cell analysis platform for enrichment☆190Updated last month
- Single-Cell Genotyping Tool☆211Updated last year
- A continually expanding collection of cancer genomics notes and data☆108Updated last month
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- Content for the OSCA Book.☆66Updated 2 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- Updated implementation of the GSEA-P R application for modern R distributions☆97Updated 3 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 9 months ago