recipes that save time
☆149May 14, 2026Updated 2 months ago
Alternatives and similar repositories for knowledgebase
Users that are interested in knowledgebase are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Jun 29, 2026Updated 3 weeks ago
- ☆28Jan 25, 2022Updated 4 years ago
- Easy single cell analysis platform for enrichment☆228Apr 3, 2026Updated 3 months ago
- scRNAseq analysis notes from Ming Tang☆822Dec 2, 2024Updated last year
- Readme☆10Mar 15, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R package for pathway analysis in scRNA-seq data☆82Aug 17, 2024Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆61Aug 17, 2024Updated last year
- R package to infer biological activities from omics data using a collection of methods.☆301Dec 16, 2025Updated 7 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆237Jul 6, 2026Updated 2 weeks ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆346Jul 28, 2020Updated 5 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆229Jul 2, 2026Updated 2 weeks ago
- High dimensional weighted gene co-expression network analysis☆487Jun 16, 2026Updated last month
- Critical downstream analysis steps for single-cell RNA sequencing data☆13Feb 21, 2021Updated 5 years ago
- ☆12Jun 11, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Clone of the Bioconductor repository for the SingleR package.☆204Jul 7, 2026Updated 2 weeks ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆145Mar 13, 2026Updated 4 months ago
- Whole mouse brain snATAC seq analysis☆29Apr 18, 2025Updated last year
- Code repository for single-cell atlas of Alzheimer's disease progression across brain regions☆42Apr 23, 2024Updated 2 years ago
- Tutorial for scRNA-seq data analysis beginners using R☆273Mar 5, 2025Updated last year
- TRAjectory-based Differential Expression analysis for SEQuencing data☆306Jun 17, 2025Updated last year
- GENome Organisation Visual Analytics☆16Dec 24, 2021Updated 4 years ago
- Hierarchical, iterative clustering for analysis of transcriptomics data in R☆120Aug 20, 2025Updated 11 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆22May 27, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pan-Cancer Single Cell Classifier☆87May 30, 2024Updated 2 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆440May 11, 2026Updated 2 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆194Aug 12, 2025Updated 11 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆304Jun 30, 2026Updated 3 weeks ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆192Mar 27, 2025Updated last year
- From geospatial to spatial -omics☆103Updated this week
- chromatin Variability Across Regions (of the genome!)☆192May 1, 2026Updated 2 months ago
- R toolkit for the analysis of single-cell chromatin data☆423Jul 2, 2026Updated 2 weeks ago
- A list of scRNA-seq analysis tools☆808Jul 14, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 7 months ago
- Fast Gene Set Enrichment Analysis☆451Jun 27, 2026Updated 3 weeks ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆98Sep 26, 2023Updated 2 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆79Jan 17, 2025Updated last year
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆342Apr 23, 2024Updated 2 years ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆662Mar 11, 2026Updated 4 months ago
- Raw data and analysis of scRNA Seq experiments for the paper Multimodal Mapping of the Immune Landscape in Human Pancreatic Cancer. This …☆15Nov 30, 2020Updated 5 years ago