hbc / knowledgebase

Related projects: ⓘ

• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆76Updated last year
• FredHutch / SEACR
  SEACR: Sparse Enrichment Analysis for CUT&RUN
  ☆99Updated last year
• broadinstitute / 2020_scWorkshop
  Code and data repository for the 2020 physalia course on single cell RNA sequencing.
  ☆55Updated 4 years ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆174Updated 2 weeks ago
• single-cell-genetics / cellsnp-lite
  Efficient genotyping bi-allelic SNPs on single cells
  ☆127Updated 3 months ago
• ncborcherding / escape
  Easy single cell analysis platform for enrichment
  ☆141Updated this week
• snakemake-workflows / single-cell-rna-seq
  A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
  ☆97Updated last year
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆158Updated last month
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆153Updated 2 months ago
• 10XGenomics / vartrix
  Single-Cell Genotyping Tool
  ☆198Updated 11 months ago
• sib-swiss / single-cell-training
  SIB course on single cell transcriptomics by mostly using the Seurat pipeline
  ☆76Updated 3 weeks ago
• YeoLab / single-cell-bioinformatics
  Course material in notebook format for learning about single cell bioinformatics methods
  ☆99Updated 8 years ago
• hbctraining / Intro-to-ChIPseq-flipped
  ☆76Updated 2 months ago
• timoast / sinto
  Tools for single-cell data processing
  ☆117Updated 3 months ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆172Updated this week
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆116Updated 4 years ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆152Updated this week
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆109Updated 3 weeks ago
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆86Updated last year
• im3sanger / dndscv
  dN/dS methods to quantify selection in cancer and somatic evolution
  ☆209Updated 11 months ago
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆202Updated 3 months ago
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆115Updated 2 years ago
• mdozmorov / Cancer_notes
  A continually expanding collection of cancer genomics notes and data
  ☆101Updated 2 months ago
• TrinityCTAT / Trinity_CTAT
  ☆115Updated last year
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆154Updated 3 months ago
• caleblareau / mgatk
  mgatk: mitochondrial genome analysis toolkit
  ☆100Updated 6 months ago
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆114Updated 4 months ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆106Updated last week
• nf-core / cutandrun
  Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …
  ☆79Updated last month
• Hoohm / dropSeqPipe
  A SingleCell RNASeq pre-processing snakemake workflow
  ☆147Updated last year