recipes that save time
☆147Feb 11, 2026Updated 2 months ago
Alternatives and similar repositories for knowledgebase
Users that are interested in knowledgebase are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Mar 16, 2026Updated 3 weeks ago
- ☆28Jan 25, 2022Updated 4 years ago
- Easy single cell analysis platform for enrichment☆218Apr 3, 2026Updated last week
- scRNAseq analysis notes from Ming Tang☆792Dec 2, 2024Updated last year
- Readme☆10Mar 15, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆59Aug 17, 2024Updated last year
- R package to infer biological activities from omics data using a collection of methods.☆289Dec 16, 2025Updated 3 months ago
- R package for pathway analysis in scRNA-seq data☆79Aug 17, 2024Updated last year
- Multi-sample multi-group scRNA-seq analysis tools☆223Mar 25, 2026Updated 2 weeks ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆223Apr 1, 2026Updated last week
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆334Jul 28, 2020Updated 5 years ago
- High dimensional weighted gene co-expression network analysis☆469Mar 13, 2026Updated 3 weeks ago
- ☆12Jun 11, 2023Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆141Mar 13, 2026Updated 3 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Clone of the Bioconductor repository for the SingleR package.☆200Mar 9, 2026Updated last month
- Whole mouse brain snATAC seq analysis☆29Apr 18, 2025Updated 11 months ago
- Code repository for single-cell atlas of Alzheimer's disease progression across brain regions☆42Apr 23, 2024Updated last year
- Tutorial for scRNA-seq data analysis beginners using R☆250Mar 5, 2025Updated last year
- TRAjectory-based Differential Expression analysis for SEQuencing data☆293Jun 17, 2025Updated 9 months ago
- GENome Organisation Visual Analytics☆15Dec 24, 2021Updated 4 years ago
- Pan-Cancer Single Cell Classifier☆85May 30, 2024Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- Hierarchical, iterative clustering for analysis of transcriptomics data in R☆120Aug 20, 2025Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R package implementation of Milo for testing for differential abundance in KNN graphs☆424Sep 4, 2025Updated 7 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆184Aug 12, 2025Updated 8 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆185Mar 27, 2025Updated last year
- Critical downstream analysis steps for single-cell RNA sequencing data☆13Feb 21, 2021Updated 5 years ago
- Take command of your set enrichment analyses.☆23Updated this week
- From geospatial to spatial -omics☆102Mar 18, 2026Updated 3 weeks ago
- Scaling Single Cell Analysis to Millions of Cells☆273Jan 13, 2026Updated 2 months ago
- R toolkit for the analysis of single-cell chromatin data☆411Updated this week
- chromatin Variability Across Regions (of the genome!)☆187Jul 10, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Interpretation of cell states using reference single-cell maps☆315Dec 19, 2025Updated 3 months ago
- Fast Gene Set Enrichment Analysis☆437Jan 2, 2026Updated 3 months ago
- Raw data and analysis of scRNA Seq experiments for the paper Multimodal Mapping of the Immune Landscape in Human Pancreatic Cancer. This …☆15Nov 30, 2020Updated 5 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆75Jan 17, 2025Updated last year
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆633Mar 11, 2026Updated last month
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆94Sep 26, 2023Updated 2 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆295Updated this week