hbc / knowledgebaseLinks
recipes that save time
☆145Updated 4 months ago
Alternatives and similar repositories for knowledgebase
Users that are interested in knowledgebase are comparing it to the libraries listed below
Sorting:
- Simplify functional enrichment results☆121Updated last year
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Updated 8 months ago
- An R interface to enrichR☆93Updated 11 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆117Updated 3 weeks ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆98Updated last year
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆105Updated 3 years ago
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆121Updated 5 years ago
- Interactively analyze single cell genomic data☆185Updated 3 months ago
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆81Updated last week
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆79Updated 7 months ago
- ☆63Updated last year
- The package wrapping the book, for deployment via the Bioconductor build system.☆97Updated last year
- chromatin Variability Across Regions (of the genome!)☆185Updated last year
- Updated implementation of the GSEA-P R application for modern R distributions☆99Updated 4 years ago
- published papers with a lot of data☆74Updated 9 months ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆106Updated 3 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆118Updated 5 months ago
- Single-Cell Genotyping Tool☆215Updated 2 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆80Updated 2 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆98Updated 2 years ago
- mgatk: mitochondrial genome analysis toolkit☆109Updated 11 months ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 3 months ago
- Code and data repository for the 2020 physalia course on single cell RNA sequencing.☆59Updated 5 years ago
- Easily install and load packages from the tidyomics ecosystem☆72Updated 2 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated last month
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- My youtube programming scripts☆59Updated 11 months ago
- Efficient genotyping bi-allelic SNPs on single cells☆155Updated 2 months ago
- Clone of the Bioconductor repository for the SingleR package.☆199Updated 2 months ago