Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host with or without metabolomics data
☆26Jan 15, 2026Updated 3 months ago
Alternatives and similar repositories for AMON
Users that are interested in AMON are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Feb 5, 2022Updated 4 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆44Mar 26, 2024Updated 2 years ago
- ☆17Feb 6, 2020Updated 6 years ago
- Compare different differential abundance and expression methods☆53Mar 8, 2022Updated 4 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- strain-level analysis tools☆39Oct 21, 2024Updated last year
- A shiny package for microbiome functional enrichment analysis☆40Updated this week
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- Python package for compositional data analysis including CLR/ILR, proportionality, partial correlation with basis shrinkage, and visualiz…☆28Mar 8, 2026Updated last month
- Protein Alignment and Detection Interface☆60Apr 1, 2024Updated 2 years ago
- Materials and tutorials for the 2020 ISB Microbiome Course☆31Nov 10, 2022Updated 3 years ago
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- ☆11Dec 28, 2019Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Nov 24, 2015Updated 10 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆51Apr 21, 2026Updated last week
- Neural networks for microbe-metabolite interaction analysis☆131Nov 4, 2022Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Oct 23, 2019Updated 6 years ago
- ☆12Apr 5, 2021Updated 5 years ago
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆14Nov 26, 2023Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆29May 9, 2025Updated 11 months ago
- Multi-omics multi-layered network integration and interpretation☆14Oct 15, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆75Sep 1, 2022Updated 3 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Nov 18, 2018Updated 7 years ago
- Pipeline to run qiime2 with snakemake☆18Apr 17, 2020Updated 6 years ago
- R package for microbiome biomarker discovery☆197Feb 19, 2025Updated last year
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Feb 10, 2026Updated 2 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆38Apr 9, 2026Updated 3 weeks ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆133Apr 22, 2026Updated last week
- Tutorials☆15Apr 2, 2022Updated 4 years ago
- shotgun pipeline☆12Apr 3, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆47Oct 3, 2023Updated 2 years ago
- STAMPS 2018 course☆14Aug 8, 2018Updated 7 years ago
- skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…☆14Nov 20, 2025Updated 5 months ago
- Model-based Integration of Metabolite Observations and Species Abundances☆25Feb 21, 2020Updated 6 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆18Feb 17, 2026Updated 2 months ago
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆15Dec 18, 2021Updated 4 years ago
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 6 years ago