lozuponelab / AMON
Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host with or without metabolomics data
☆21Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for AMON
- A shiny package for microbiome functional enrichment analysis☆36Updated 3 weeks ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆22Updated 9 months ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 3 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- A fast method for analysis of composition of microbiomes☆8Updated 2 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆34Updated 7 months ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆23Updated 3 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 6 months ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 5 months ago
- ALDEx_bioc is the working directory for updating bioconductor☆27Updated 10 months ago
- ☆11Updated 3 years ago
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- Processing support for Greengenes2☆12Updated last year
- ☆11Updated 4 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated 8 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 2 years ago
- tidyMicro GitHup Repository☆18Updated 3 years ago
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆12Updated 5 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 6 years ago
- The Mouse Gastrointestinal Bacteria Catalogue☆14Updated 2 years ago
- ☆20Updated 4 years ago
- ☆21Updated last year
- ☆19Updated 3 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 2 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆20Updated 2 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 5 years ago
- ☆10Updated 2 years ago