lozuponelab / AMONLinks
Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host with or without metabolomics data
☆23Updated last year
Alternatives and similar repositories for AMON
Users that are interested in AMON are comparing it to the libraries listed below
Sorting:
- A shiny package for microbiome functional enrichment analysis☆36Updated 5 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆39Updated last year
- Plot microbiome time series in parallel☆26Updated last year
- gutSMASH☆55Updated last week
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆65Updated last year
- OPAL: Open-community Profiling Assessment tooL☆29Updated 8 months ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12Updated 4 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- microbial association network clustering algorithm☆14Updated last year
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 3 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 3 months ago
- Repository of the integrated mouse gut metagenomic catalog☆19Updated 3 years ago
- ☆28Updated last year
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Updated 3 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- A comprehensive pipeline for short read metagenomic data☆25Updated 5 years ago
- The Microbial Co-occurrence Network Explorer☆21Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- A package to annotate protein sequences☆59Updated 7 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆24Updated 2 months ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- ☆41Updated last year
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 2 months ago