lozuponelab / AMON
Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host with or without metabolomics data
☆21Updated 10 months ago
Alternatives and similar repositories for AMON:
Users that are interested in AMON are comparing it to the libraries listed below
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated 10 months ago
- A fast method for analysis of composition of microbiomes☆8Updated 2 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- ☆14Updated 3 months ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 3 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 8 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 9 months ago
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated 11 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- ☆11Updated 5 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- Processing support for Greengenes2☆12Updated last year
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 2 years ago
- tidyMicro GitHup Repository☆17Updated 3 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- ☆11Updated 6 months ago
- ☆13Updated 2 months ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆12Updated 5 years ago
- ☆22Updated last year
- ☆19Updated 4 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated this week