EvaYiwenWang / PLSDAbatchView external linksLinks
Development repository for R package 'PLSDAbatch ' hosted on Bioconductor.
☆14Jan 6, 2026Updated last month
Alternatives and similar repositories for PLSDAbatch
Users that are interested in PLSDAbatch are comparing it to the libraries listed below
Sorting:
- Assort phage protein sequences into phamilies using MMseqs2☆11Dec 16, 2024Updated last year
- A logistic regression model for testing differential abundance in compositional microbiome data☆13Jul 25, 2023Updated 2 years ago
- Processing support for Greengenes2☆14Jul 31, 2023Updated 2 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 9 years ago
- Computation of average nucleotide identity with the use of MMseqs2☆15Dec 11, 2024Updated last year
- Batch effects removal for microbiome data via conditional quantile regression☆32Aug 23, 2022Updated 3 years ago
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆18Aug 16, 2021Updated 4 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 2 months ago
- Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics usin…☆26Jan 30, 2025Updated last year
- ☆26Jun 26, 2025Updated 7 months ago
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- ☆63Feb 27, 2024Updated last year
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆26Nov 14, 2025Updated 3 months ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Jun 12, 2024Updated last year
- A de novo prediction tool of chromatin accessible regions for plant genomes☆10Aug 12, 2021Updated 4 years ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆33Oct 1, 2024Updated last year
- ☆29Apr 18, 2023Updated 2 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆36Oct 14, 2025Updated 4 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆36Feb 26, 2023Updated 2 years ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆36May 9, 2024Updated last year
- ☆34Oct 6, 2025Updated 4 months ago
- MutView is a tool to look the reads cover a mutation in bam file, output file is html format, just like a lightweight IGV(Integrative Gen…☆14Dec 20, 2023Updated 2 years ago
- cgat-apps repository☆34Apr 9, 2025Updated 10 months ago
- ☆13May 27, 2025Updated 8 months ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated 3 weeks ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆49Jan 27, 2026Updated 2 weeks ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Sep 22, 2022Updated 3 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Pipeline for Recombinant Yeast genoMEs That Identifies Markers of Engineering☆12May 13, 2024Updated last year
- Variant annotation and merging pipeline☆42Jul 22, 2025Updated 6 months ago
- Detecting recombination of viral lineages☆11Dec 23, 2025Updated last month
- Query sequence database by HMMs arranged in predefined synteny structure☆13Nov 3, 2023Updated 2 years ago
- pTFCE SPM Toolbox☆12Jan 2, 2020Updated 6 years ago
- Tracebacks for Humans (in Jupyter notebooks)☆12Dec 30, 2025Updated last month
- R functions underlying ExpressAnalyst☆13Feb 7, 2026Updated last week
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Dec 16, 2022Updated 3 years ago
- ☆11Jun 13, 2024Updated last year
- Minimum Bait Cover Toolkit Syotti.☆13Jan 22, 2025Updated last year
- ☆13Aug 13, 2024Updated last year