microbes-dbs utilities to fetch microbe relevant databases
☆10Jul 24, 2022Updated 4 years ago
Alternatives and similar repositories for microbe-dbs
Users that are interested in microbe-dbs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package to access and download data from the ATCC Genome Portal (https://genomes.atcc.org/)☆12Dec 23, 2025Updated 10 months ago
- Uncover organisms' metabolic blueprints☆18Jun 18, 2024Updated 2 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆26May 18, 2024Updated 2 years ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 6 years ago
- Bitpacked sequence trait and implementation☆19Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Intra-species bacterial contamination detection☆26Jul 10, 2026Updated 3 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated 2 years ago
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆11Sep 7, 2026Updated last month
- ☆19Aug 25, 2026Updated 2 months ago
- Population genomics from metagenomes☆13Sep 1, 2024Updated 2 years ago
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 9 years ago
- Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/clien…☆12May 28, 2022Updated 4 years ago
- ☆47Jun 27, 2023Updated 3 years ago
- Tutorials for data science and bioinformatics☆13May 3, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Converts any gd importable image to ANSI control codes for terminal representation☆13Oct 27, 2011Updated 15 years ago
- ☆12Apr 21, 2016Updated 10 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 4 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Oct 14, 2026Updated 2 weeks ago
- Deep learning for Metagenome Assembly Error Detection☆26Nov 30, 2020Updated 5 years ago
- DAS Tool☆178Oct 9, 2026Updated 3 weeks ago
- circos pipeline☆20May 8, 2021Updated 5 years ago
- A phylogenetic profile analysis tool☆38Sep 14, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Ancestral Sequence Reconstruction in Python☆15May 9, 2019Updated 7 years ago
- Simulate microbial community batch culture experiments.☆43Oct 31, 2024Updated 2 years ago
- ☆24Dec 5, 2018Updated 7 years ago
- http://www.combio.pl/alfree☆23Jun 14, 2022Updated 4 years ago
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated 9 months ago
- ☆10Jul 23, 2020Updated 6 years ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Jul 30, 2026Updated 3 months ago
- MiGA: Microbial Genomes Atlas☆33Aug 7, 2026Updated 2 months ago
- OxML2020☆12Aug 14, 2020Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆52Jun 11, 2025Updated last year
- Python package to atom map, correct and suggest enzymatic reactions☆46Apr 11, 2024Updated 2 years ago
- Detection of the structural, evolutionary and functional relationship between different proteins and protein families requires comparativ…☆15Sep 22, 2023Updated 3 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Utility scripts for useful tasks.☆18Mar 29, 2023Updated 3 years ago
- Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main seque…☆20Aug 30, 2018Updated 8 years ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago