gerberlab / mditreLinks
☆13Updated 3 years ago
Alternatives and similar repositories for mditre
Users that are interested in mditre are comparing it to the libraries listed below
Sorting:
- ☆25Updated 5 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated 3 years ago
- ☆10Updated 6 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 4 years ago
- Robust Aitchison PCA from sparse count data☆37Updated 3 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated 2 years ago
- ☆17Updated last year
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆38Updated 8 years ago
- Functional Analysis of Metagenomes by Likelihood Inference☆17Updated 3 months ago
- ☆27Updated 2 years ago
- ☆38Updated 2 years ago
- simple and not slow ORF caller☆21Updated last month
- ☆15Updated 9 years ago
- ☆18Updated 4 years ago
- An R package for learning log-ratio biomarkers from high-throughput sequencing data.☆23Updated 2 years ago
- ☆29Updated last year
- ☆19Updated 5 years ago
- A manually curated database of human gut metabolic modules.☆17Updated 7 years ago
- Bioinformatics Open Source Sequence machine☆32Updated 2 years ago
- MicrobeDirectory 2.0☆22Updated 5 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated last month
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Updated 2 years ago
- 'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and prov…☆17Updated last year
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆39Updated 8 months ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Updated 3 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31Updated 4 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Updated 8 months ago
- PaperBLAST: find papers about a protein or its homologs☆50Updated 3 weeks ago
- Locus and lineage tests for bacterial GWAS☆29Updated 8 years ago