A pathway profiling tool designed for traversing metabolic pathway graphs, identifying most complete paths based on an evaluation set of KEGG orthologs (KO), and generalized for internal usage within Python and via CLI executables.
☆11Sep 10, 2026Updated last month
Alternatives and similar repositories for kegg_pathway_profiler
Users that are interested in kegg_pathway_profiler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated 2 years ago
- Fit LOg-RAtio Lasso regression for compositional covariates☆16Updated this week
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Genome-informed, trait-based dynamic energy budget modeling of microbes with ML analysis of emergent strategies☆21Feb 18, 2026Updated 8 months ago
- Tool for unsupervised contig binning from viral metagenomes☆18Oct 22, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆33Oct 1, 2026Updated last month
- MAG Circularization Method☆33Nov 4, 2025Updated last year
- Leveraging Heterogeneous Network Embedding for Metabolic Pathway Prediction☆18Jul 8, 2021Updated 5 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆29Feb 6, 2023Updated 3 years ago
- Python package for association, differential, clustered, and sample-specific ensemble networks. Direct support for compositional data an…☆12Jun 17, 2026Updated 4 months ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆108Oct 19, 2026Updated 2 weeks ago
- microntology: a lightweight, data-driven controlled vocabulary to describe Earth's microbial habitats.☆12Oct 14, 2026Updated 3 weeks ago
- Download refseq-genomic data and prepare it for Kraken☆11Jan 20, 2017Updated 9 years ago
- Metapresence is a Python tool to calculate metrics to assess the evenness of the coverage distribution on DNA sequences, in order to infe…☆10Feb 18, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated last year
- TransAnnot - a fast transcriptome annotation pipeline☆20Jan 22, 2025Updated last year
- R package for distilling functional annotations of bacterial genomes and metagenomes☆12Feb 27, 2025Updated last year
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆23Aug 17, 2026Updated 2 months ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆26Updated this week
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆25Jun 9, 2021Updated 5 years ago
- UFCG: Universal Fungal Core Genes☆37Jul 29, 2025Updated last year
- ☆27Jun 20, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Jaeger is a quick and precise tool for detecting viruses in sequence assemblies.☆11Oct 14, 2026Updated 3 weeks ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 4 years ago
- MAGScoT - a MAG scoring and refinement tool☆51Updated this week
- Pipeline which removes human DNA from microbial shotgun samples.☆16Aug 25, 2025Updated last year
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆15Dec 18, 2021Updated 4 years ago
- A pipeline for whole genome assembly☆18Apr 21, 2022Updated 4 years ago
- Identifying misassemblies via deep learning☆11May 1, 2024Updated 2 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆14Mar 14, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆20Oct 31, 2026Updated last week
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.☆19May 30, 2023Updated 3 years ago
- Fast implementation of HMMSEARCH optimized for high-memory systems using PyHMMER☆12Jan 13, 2026Updated 9 months ago
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆18Nov 7, 2019Updated 6 years ago
- ☆53May 29, 2026Updated 5 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆31Jan 15, 2026Updated 9 months ago