A logistic regression model for testing differential abundance in compositional microbiome data
☆13Jul 25, 2023Updated 3 years ago
Alternatives and similar repositories for LOCOM-Archive
Users that are interested in LOCOM-Archive are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Microbiome profiling☆15Nov 20, 2025Updated 11 months ago
- microntology: a lightweight, data-driven controlled vocabulary to describe Earth's microbial habitats.☆12Oct 14, 2026Updated 3 weeks ago
- Development repository for R package 'PLSDAbatch ' hosted on Bioconductor.☆16Jun 26, 2026Updated 4 months ago
- A linear decomposition model for testing microbiome association and mediation☆14Sep 7, 2023Updated 3 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15Jun 1, 2023Updated 3 years ago
- ☆18Feb 3, 2023Updated 3 years ago
- A functional profiler for metagenomes using FracMinHash☆22Apr 20, 2026Updated 6 months ago
- A curated biochemical database that integrates and refines data from KEGG and ATLAS databases to support precise analyses of biochemical …☆15May 13, 2026Updated 5 months ago
- mLDM: a new hierarchical Bayesian statistical model for sparse microbial association discovery☆11Oct 18, 2016Updated 10 years ago
- Count and compare 16S rRNA genes within a genus☆17Aug 1, 2024Updated 2 years ago
- webpage crawling tools for pubmed, google scholar and rss☆14May 2, 2025Updated last year
- A healthy human gut genome collection☆26Aug 21, 2025Updated last year
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆11Oct 12, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Official code release of Hilbert Diffusion Model (PyTorch ver.)☆21Aug 17, 2024Updated 2 years ago
- A microbial profiling framework for metagenomic analysis☆24Apr 9, 2020Updated 6 years ago
- ☆22May 14, 2021Updated 5 years ago
- A project template to start writing deep learning models using Keras.☆11Aug 2, 2024Updated 2 years ago
- 🛠️🧬 A Software Framework to Manipulate Assembly Graphs☆22Updated this week
- General procedure for making QIIME 2 compatible SILVA reference files☆20Oct 3, 2024Updated 2 years ago
- Add new taxa or taxonomic groups to the NCBI Taxdump files☆20Mar 9, 2020Updated 6 years ago
- NCBI Taxonomy History Browser☆10May 7, 2026Updated 6 months ago
- ☆10Aug 18, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆30Sep 25, 2026Updated last month
- ☆10Nov 15, 2025Updated 11 months ago
- ☆21Mar 15, 2023Updated 3 years ago
- This is the R implementation of a robust correlation matrix estimator usefull in case of high-dimensional data to remove the bias. It al…☆14Mar 10, 2019Updated 7 years ago
- Simple-to-use interactive comparison of two bacterial genomes☆28Jan 30, 2026Updated 9 months ago
- Linear Decomposition Model☆25Jun 16, 2023Updated 3 years ago
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆53May 5, 2026Updated 6 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆73Sep 1, 2022Updated 4 years ago
- ☆10Jan 8, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Dec 24, 2023Updated 2 years ago
- ☆14Apr 25, 2026Updated 6 months ago
- ALDEx_bioc is the working directory for updating bioconductor☆31Mar 27, 2026Updated 7 months ago
- R Interface to the ClassyFire REST API☆15Aug 21, 2026Updated 2 months ago
- BEAV: Bacterial Element Annotation reVamped☆78Aug 21, 2025Updated last year
- Vanilla regression methods for microbiome differential abundance analysis☆61Nov 3, 2020Updated 6 years ago
- ☆17Jun 9, 2025Updated last year