biocore / songbirdLinks
Vanilla regression methods for microbiome differential abundance analysis
☆59Updated 4 years ago
Alternatives and similar repositories for songbird
Users that are interested in songbird are comparing it to the libraries listed below
Sorting:
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 10 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 5 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 6 years ago
- ☆17Updated 2 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆74Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- Metagenomics-related extended functionalities to samtools☆21Updated 2 years ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆91Updated last year
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆83Updated 9 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated last year
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆87Updated last year
- ☆76Updated last year
- Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
- Rapid and scalable correlation estimation for compositional data☆93Updated last year
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆63Updated 11 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 4 months ago
- Woltka: a versatile meta'omic data classifier☆76Updated 5 months ago
- ☆55Updated last week
- Statistical analysis for sparse high-throughput sequencing☆69Updated 8 months ago
- GraftM - Rapid community profiles from metagenomes☆46Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- A toolbox for improving metagenome-assembled genomes.☆63Updated 4 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆81Updated 3 months ago