biocore / songbirdLinks
Vanilla regression methods for microbiome differential abundance analysis
☆58Updated 4 years ago
Alternatives and similar repositories for songbird
Users that are interested in songbird are comparing it to the libraries listed below
Sorting:
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 7 months ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆74Updated 2 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- More scalable dereplication for metagenome assembled genomes☆53Updated 4 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 11 months ago
- Estimate metagenomic coverage and sequence diversity☆53Updated 10 months ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆85Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆97Updated 2 years ago
- Prediction of prophages from bacterial genomes☆78Updated last year
- Statistical analysis for sparse high-throughput sequencing☆69Updated 5 months ago
- R package version of the splinectomy longitudinal statistical analysis tools☆17Updated 3 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆60Updated 4 years ago
- A toolbox for improving metagenome-assembled genomes.☆63Updated 4 years ago
- Woltka: a versatile meta'omic data classifier☆74Updated 2 months ago
- Convert GTDB taxonomy to NCBI taxdump format☆71Updated last year
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- ☆17Updated 2 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 9 months ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆36Updated 2 months ago
- GraftM - Rapid community profiles from metagenomes☆45Updated 10 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Robust Aitchison PCA from sparse count data☆34Updated 2 years ago
- ☆41Updated 4 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- ☆82Updated last year
- Horizontal gene transfer (HGT) identification pipeline☆58Updated 2 years ago
- ☆50Updated last year