Alternatives and similar repositories for q2-longitudinal:

Users that are interested in q2-longitudinal are comparing it to the libraries listed below

• thomasp85 / FindMyFriends
  Fast alignment-free pangenome creation and exploration
  ☆27Updated 4 years ago
• CharlieCarpenter / tidyMicro
  tidyMicro GitHup Repository
  ☆17Updated 3 years ago
• danknights / mwas
  Perform microbiome-wide association studies with a variety of models
  ☆16Updated 8 years ago
• knightlab-analyses / american-gut-analyses
  ☆15Updated 6 years ago
• opisthokonta / tsnemicrobiota
  t-distributed stochastic neighbor embedding for microbiota data
  ☆12Updated 5 years ago
• ggloor / CoDa_microbiome_tutorial
  Workshop for NGS'18 conference, Barcelona 2018
  ☆24Updated 6 years ago
• tmbuza / iMAP
  iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline
  ☆13Updated 9 months ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆30Updated last year
• knights-lab / Food_Tree
  USDA Nutrition codes Tree
  ☆10Updated 5 years ago
• jbisanz / MicrobeR
  Handy tools for Microbiome analysis in R
  ☆18Updated 5 years ago
• gschofl / reutils
  Talk to the NCBI EUtils
  ☆21Updated 4 years ago
• reptalex / phylofactor
  ☆26Updated 11 months ago
• SilasK / ipath3
  Python wrapper for ipath3
  ☆10Updated last year
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆23Updated last year
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆21Updated 2 years ago
• statdivlab / stamps2019
  statdivlab's teaching materials for STAMPS @ the MBL in 2019
  ☆12Updated 5 years ago
• snz20 / carnelian
  ☆11Updated 4 years ago
• aametwally / MetaLonDA
  METAgenomic LONgitudinal Differential Abundance method
  ☆16Updated 5 years ago
• joey711 / shiny-phyloseq
  An interactive web application for demonstrating and using phyloseq.
  ☆60Updated 5 years ago
• csoneson / treeclimbR
  ☆20Updated last month
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated 9 months ago
• mblstamps / stamps2018
  STAMPS 2018 course
  ☆16Updated 6 years ago
• grunwaldlab / analysis_of_microbiome_community_data_in_r
  This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…
  ☆17Updated last year
• katcoyte / MK-SpikeSeq
  Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples
  ☆13Updated 3 years ago
• lozuponelab / AMON
  Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…
  ☆21Updated 10 months ago
• SchlossLab / Sze_Obesity_mBio_2016
  ☆12Updated 7 years ago
• ggloor / ALDEx_bioc
  ALDEx_bioc is the working directory for updating bioconductor
  ☆28Updated this week
• audy / miseq-16S-pipeline
  HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq
  ☆11Updated 9 years ago
• vdblab / FLORAL
  Fit LOg-RAtio Lasso regression for compositional covariates
  ☆12Updated this week
• HCBravoLab / metagenomeFeatures
  R package for annotating metagenomic datasets with taxonomic information
  ☆10Updated 5 years ago