Askarbek-orakov / ASARLinks
Advanced metagenomic Sequence Analysis in R
☆15Updated 6 years ago
Alternatives and similar repositories for ASAR
Users that are interested in ASAR are comparing it to the libraries listed below
Sorting:
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆22Updated 7 years ago
- ☆23Updated 7 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- De novo Extraction of Strains from MetAgeNomes☆70Updated 5 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- ☆53Updated 4 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆48Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Evolutionary Transcriptomics with R☆44Updated last week
- Visualize whole genome alignments as linear maps☆73Updated 9 months ago
- A set of scripts for calculating pairwise SNP distance☆41Updated 2 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 8 months ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- GATB Minia assembly pipeline☆30Updated 2 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year