Askarbek-orakov / ASAR
Advanced metagenomic Sequence Analysis in R
☆15Updated 6 years ago
Alternatives and similar repositories for ASAR:
Users that are interested in ASAR are comparing it to the libraries listed below
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- OPAL: Open-community Profiling Assessment tooL☆28Updated 3 months ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 7 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 4 months ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- ☆23Updated 6 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 3 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- ☆12Updated last month
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 3 months ago
- Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI☆24Updated 10 years ago
- De novo Extraction of Strains from MetAgeNomes☆68Updated 4 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- Surveillance of pathogens using population genomics and sequencing☆21Updated this week
- ☆20Updated 8 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆29Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆31Updated 7 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago