Advanced metagenomic Sequence Analysis in R
☆15Aug 17, 2018Updated 8 years ago
Alternatives and similar repositories for ASAR
Users that are interested in ASAR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 4 years ago
- This repository contains code and data for reproducing the data-adaptive filtering method described in "Filtering procedures for untarget…☆11Apr 6, 2019Updated 7 years ago
- Tools for extracting individual genomes from metagenomes☆16Dec 4, 2023Updated 2 years ago
- abawaca is a binning program for metagenomics☆13May 20, 2017Updated 9 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆32May 25, 2021Updated 5 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Jan 21, 2022Updated 4 years ago
- Differential analysis of multi-omics data based on the Tweedie distribution☆33Sep 28, 2026Updated last month
- shotgun pipeline☆12Apr 3, 2019Updated 7 years ago
- A simple script to display stuff on a world map with R and ggplot☆18Feb 17, 2026Updated 8 months ago
- v1☆10Oct 21, 2020Updated 6 years ago
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆23Dec 27, 2018Updated 7 years ago
- Workflow for detecting genome-wide horizontal gene transfers☆10May 29, 2018Updated 8 years ago
- METAgenomic LONgitudinal Differential Abundance method☆15Dec 17, 2019Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Tool to help visualize data after BLAST by generating pathways on KEGG using an input file of genes and their associated KEGG accession.☆10Apr 29, 2022Updated 4 years ago
- A Perl pipeline for identifying marker genes and build phylogenetic trees for a set of genomes☆14Jun 19, 2017Updated 9 years ago
- Metagenomics Workshop☆27Nov 23, 2016Updated 9 years ago
- ☆12Apr 6, 2021Updated 5 years ago
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 6 years ago
- Course material for OPEN & REPRODUCIBLE MICROBIOME DATA ANALYSIS SPRING SCHOOL☆30May 1, 2020Updated 6 years ago
- Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.☆26Sep 21, 2018Updated 8 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆20Aug 4, 2020Updated 6 years ago
- A metagenomic and isolate assembly and analysis pipeline built with AMOS☆92Nov 20, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- WGS (Wheat) Robust Assembly Pipeline☆22Sep 4, 2021Updated 5 years ago
- ☆13Feb 5, 2022Updated 4 years ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- StrainFinder☆29Jul 8, 2018Updated 8 years ago
- [ARCHIVE - very out of date] Intro textbook for web development with Sinatra and ActiveRecord☆13Dec 31, 2015Updated 10 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆21Oct 17, 2023Updated 3 years ago
- GraftM - Rapid community profiles from metagenomes☆56Nov 6, 2025Updated last year
- DYNamics Agnostic Network MOdels☆18Jul 3, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆21Mar 15, 2023Updated 3 years ago
- ✅ PeopleBudget is an open-source tool for hosting participatory budgets elections at the local level.☆10Oct 4, 2022Updated 4 years ago
- Automatically calculate phylogenetic trees from bacterial core genes☆21May 28, 2026Updated 5 months ago
- Kasahara lab. public repository.☆14Aug 30, 2026Updated 2 months ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Aug 31, 2017Updated 9 years ago
- Throughput PhATE processing of draft or finished phage genomes☆14Apr 19, 2021Updated 5 years ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago