qiime2 / q2galaxy
Generate Galaxy tool descriptions automatically from QIIME 2 actions.
☆19Updated 3 months ago
Related projects: ⓘ
- Materials and presentation for the 2023 ISB Microbiome course.☆20Updated 3 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆46Updated last year
- gutSMASH☆51Updated 4 months ago
- ☆17Updated last month
- Accurate metagenomi/metatranscriptomic analysis pipeline☆22Updated 3 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- StrainFinder☆27Updated 6 years ago
- Analyses in R and Python Using curatedMetagenomicData☆22Updated last year
- Simple bacterial assembly and annotation pipeline☆60Updated this week
- qiime2 plugin for aldex2 for differential abundance analysis☆10Updated 4 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆38Updated last month
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆53Updated last year
- Sparse Cooccurence Network Investigation for Compositional data☆21Updated 2 weeks ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆51Updated 2 weeks ago
- Metagenome analysis using the Kraken software suite☆27Updated last year
- ☆25Updated 3 weeks ago
- ☆42Updated 3 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- ☆29Updated last year
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- ☆34Updated 2 months ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated 11 months ago
- This repository hosts a large collection of Nextflow snippets☆56Updated 3 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆52Updated 3 weeks ago
- GTDB taxonomy taxdump files with trackable TaxIds☆46Updated 4 months ago
- OPAL: Open-community Profiling Assessment tooL☆26Updated last month
- A versatile toolkit for k-mers with taxonomic information☆74Updated last month
- A package to annotate protein sequences☆53Updated 2 months ago
- Microbiome classification pipeline☆63Updated 5 months ago