qiime2 / q2galaxyLinks
Generate Galaxy tool descriptions automatically from QIIME 2 actions.
☆20Updated 3 weeks ago
Alternatives and similar repositories for q2galaxy
Users that are interested in q2galaxy are comparing it to the libraries listed below
Sorting:
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Woltka: a versatile meta'omic data classifier☆76Updated 4 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆67Updated last year
- Protein Alignment and Detection Interface☆60Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Analyses in R and Python Using curatedMetagenomicData☆33Updated 2 months ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Bayesian Inferential Regression for Differential Microbiome Analysis☆23Updated 2 years ago
- gutSMASH☆57Updated 3 months ago
- A catalogue of available long read sequencing data analysis tools☆85Updated 3 weeks ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆57Updated last month
- seqfu - Sequece Fastx Utilities☆126Updated this week
- Sparse Cooccurence Network Investigation for Compositional data☆25Updated last year
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Updated 9 months ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated this week
- Snakemake pipeline for simulating shotgun metagenomic samples☆29Updated 4 months ago
- Robust Aitchison PCA from sparse count data☆37Updated 3 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated last week
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- Pathoscope: Species identification and strain attribution with unassembled sequencing data☆60Updated 6 years ago
- Sample search by metadata and features☆47Updated 2 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 7 months ago
- ☆32Updated last year
- (Meta-)genome screening for functional and natural product gene sequences☆101Updated this week
- SARS-CoV-2 workflow for nanopore sequence data☆42Updated last month
- Merging paired-end reads and removing adapters☆46Updated 2 months ago
- Bioinformatics Tools☆90Updated last week
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆93Updated 5 months ago
- Simple bacterial assembly and annotation pipeline☆81Updated last week