qiime2 / q2galaxy
Generate Galaxy tool descriptions automatically from QIIME 2 actions.
☆19Updated last week
Alternatives and similar repositories for q2galaxy:
Users that are interested in q2galaxy are comparing it to the libraries listed below
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆57Updated 7 months ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 3 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 5 months ago
- ☆20Updated last week
- Metagenomics Workshop☆28Updated 8 years ago
- Analyses in R and Python Using curatedMetagenomicData☆31Updated 3 weeks ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- ☆32Updated last year
- SHallow shOtGUN profiler☆53Updated 3 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- OPAL: Open-community Profiling Assessment tooL☆28Updated 3 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆44Updated 4 months ago
- ☆41Updated 4 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆47Updated 3 years ago
- ☆17Updated 2 years ago
- StrainFinder☆26Updated 6 years ago
- Simple bacterial assembly and annotation pipeline☆73Updated 3 weeks ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 4 months ago
- Robust Aitchison PCA from sparse count data☆33Updated 2 years ago
- gutSMASH☆53Updated 4 months ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Updated 9 months ago
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated 7 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- qiime2 plugin for aldex2 for differential abundance analysis☆10Updated 5 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- StaG Metagenomic Workflow Collaboration☆29Updated 8 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year