mwang87 / q2_metabolomicsLinks
☆11Updated 5 years ago
Alternatives and similar repositories for q2_metabolomics
Users that are interested in q2_metabolomics are comparing it to the libraries listed below
Sorting:
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- gutSMASH☆55Updated 6 months ago
- ☆23Updated 5 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 3 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆37Updated last year
- ☆15Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- ☆12Updated 4 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- ☆18Updated 4 years ago
- Codon Usage Analysis and Prediction of Gene Expressivity☆22Updated 6 years ago
- A fast method for analysis of composition of microbiomes☆8Updated 3 years ago
- ☆37Updated last year
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆19Updated 4 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆22Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 6 months ago
- ☆30Updated 6 months ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆61Updated 10 months ago
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- The Microbial Co-occurrence Network Explorer☆21Updated last year
- A general metagenomics data mining system focus on robust microbiome research☆57Updated 10 months ago
- Plot microbiome time series in parallel☆26Updated last year
- Working with the outputs of sourmash in R☆27Updated last year