Alternatives and similar repositories for stamps2018:

Users that are interested in stamps2018 are comparing it to the libraries listed below

• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆35Updated 5 years ago
• statdivlab / tinyvamp
  ☆19Updated last year
• statdivlab / stamps2019
  statdivlab's teaching materials for STAMPS @ the MBL in 2019
  ☆12Updated 5 years ago
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆23Updated 2 years ago
• ggloor / CoDa_microbiome_tutorial
  Workshop for NGS'18 conference, Barcelona 2018
  ☆24Updated 6 years ago
• itsmisterbrown / microfiltR
  accessory functions for processing microbial community data
  ☆12Updated 2 years ago
• yijuanhu / LDM-Archive
  Linear Decomposition Model
  ☆24Updated last year
• lakarstens / ControllingContaminants16S
  ☆13Updated 5 years ago
• arendsee / rhmmer
  Simple R utilities for working with HMMER
  ☆18Updated 6 months ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆31Updated last year
• jennahamlin / tinselR
  An Amazing Shiny App
  ☆17Updated 3 years ago
• fkeck / bioseq
  A Toolbox for Manipulating Biological Sequences in R
  ☆22Updated 2 years ago
• brendankelly / micropower
  power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA
  ☆36Updated 9 years ago
• adw96 / breakaway
  Species richness with high diversity
  ☆68Updated last week
• joey711 / shiny-phyloseq
  An interactive web application for demonstrating and using phyloseq.
  ☆60Updated 5 years ago
• wejlab / MetaScope
  An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)
  ☆19Updated 2 weeks ago
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆33Updated 4 years ago
• ying14 / yingtools2
  Ying's tools for analysis, with particular focus on microbiome data
  ☆41Updated last month
• tbradley1013 / tree-subset-shiny
  This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees
  ☆15Updated 6 years ago
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated 11 months ago
• ropensci / phylotaR
  An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
  ☆23Updated 9 months ago
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated last week
• CenterForStatistics-UGent / RCM
  A model-based visualization method for microbiome data
  ☆16Updated 2 years ago
• SchlossLab / mikropml-snakemake-workflow
  Snakemake template for building reusable and scalable machine learning pipelines with mikropml
  ☆12Updated 2 months ago
• gschofl / reutils
  Talk to the NCBI EUtils
  ☆22Updated 4 years ago
• statdivlab / paramedic
  Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations
  ☆14Updated 11 months ago
• KarstensLab / microshades
  This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions f…
  ☆63Updated 10 months ago
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆48Updated last year
• gosling-lang / grosling
  R interface to 'Gos'
  ☆38Updated 2 years ago
• spholmes / F1000_workflow
  ☆43Updated 7 years ago