Code used in MiCE 8992 Spring 2016
☆44Apr 19, 2016Updated 9 years ago
Alternatives and similar repositories for mice8992-2016
Users that are interested in mice8992-2016 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Perform microbiome-wide association studies with a variety of models☆18Feb 14, 2017Updated 9 years ago
- ☆12Jun 12, 2019Updated 6 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆44Mar 26, 2024Updated 2 years ago
- This repo is designed as a step-by-step tutorial to teach RNA-seq analysis☆16Dec 21, 2025Updated 3 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆25Jan 24, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Course material for OPEN & REPRODUCIBLE MICROBIOME DATA ANALYSIS SPRING SCHOOL☆29May 1, 2020Updated 5 years ago
- ☆43Jul 31, 2017Updated 8 years ago
- Emperor a tool for the analysis and visualization of large microbial ecology datasets☆54Jan 12, 2026Updated 3 months ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆32Aug 22, 2023Updated 2 years ago
- ☆23May 16, 2020Updated 5 years ago
- Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination☆14Sep 1, 2025Updated 7 months ago
- mLDM: a new hierarchical Bayesian statistical model for sparse microbial association discovery☆11Oct 18, 2016Updated 9 years ago
- ☆64Mar 13, 2026Updated last month
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆644Feb 27, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆11Dec 28, 2019Updated 6 years ago
- Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.☆285Dec 19, 2022Updated 3 years ago
- Regulatory Element Locus Intersection (RELI) Analysis☆14Jan 22, 2021Updated 5 years ago
- ☆14May 1, 2024Updated last year
- ☆16May 22, 2023Updated 2 years ago
- ** Blood metabolome predicts gut microbiome α-diversity in humans**☆24Sep 23, 2019Updated 6 years ago
- Statistical Analysis of Metagenomic Profiles☆94Jan 26, 2026Updated 2 months ago
- The Biological Observation Matrix (BIOM) Format Project☆97Dec 23, 2025Updated 3 months ago
- Neural networks for microbe-metabolite interaction analysis☆130Nov 4, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- An interactive web application for demonstrating and using phyloseq.☆60Jul 18, 2019Updated 6 years ago
- Linear Decomposition Model☆25Jun 16, 2023Updated 2 years ago
- Workshops on Computational Biology organized by our lab☆10Mar 25, 2024Updated 2 years ago
- ☆20Jun 8, 2020Updated 5 years ago
- An R package for downstream data analysis of microbiome omics data☆274Apr 9, 2026Updated last week
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- ☆25Oct 9, 2020Updated 5 years ago
- ☆15Mar 14, 2023Updated 3 years ago
- ☆40Dec 16, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆20Dec 9, 2022Updated 3 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆35Oct 26, 2020Updated 5 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 3 years ago
- Vanilla regression methods for microbiome differential abundance analysis☆61Nov 3, 2020Updated 5 years ago
- ☆61Nov 7, 2019Updated 6 years ago
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…☆16Nov 30, 2023Updated 2 years ago