Alternatives and similar repositories for q2-feature-classifier

Users that are interested in q2-feature-classifier are comparing it to the libraries listed below

• biocore / oecophylla
  shotgun pipeline
  ☆12Updated 6 years ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆53Updated 3 years ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• EnvGen / metagenomics-workshop
  Metagenomics Workshop
  ☆28Updated 8 years ago
• RAHenriksen / NGSNGS
  NGSNGS: Next generation simulator for next generation sequencing data
  ☆54Updated 11 months ago
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆49Updated last week
• linsalrob / SRA_Metadata
  Get, parse, and extract information from the SRA metadata files
  ☆45Updated 3 years ago
• zellerlab / siamcat
  R package for Statistical Inference of Associations between Microbial Communities And host phenoType
  ☆57Updated last year
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆17Updated 4 months ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆66Updated last year
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆80Updated last month
• replikation / poreCov
  SARS-CoV-2 workflow for nanopore sequence data
  ☆42Updated 3 months ago
• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆56Updated 2 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• neherlab / pan-genome-visualization
  Visualization of the pan-genome output by panX
  ☆65Updated 5 months ago
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆41Updated 2 years ago
• Gaius-Augustus / MakeHub
  Fully automated generation of UCSC assembly hubs
  ☆35Updated last year
• schmeing / ReSeq
  More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original
  ☆51Updated 3 years ago
• kaanb93 / q2-krona
  Implementation of Krona to QIIME2
  ☆16Updated last year
• Ecogenomics / gtdb-species-clusters
  Toolkit for establishing, updating, and validating GTDB species clusters
  ☆20Updated last month
• Arcadia-Science / seqqc
  A Nextflow pipeline to identify quality control issues with new sequencing data.
  ☆28Updated 2 years ago
• wejlab / animalcules
  R shiny app for interactive microbiome analysis
  ☆56Updated 5 months ago
• ArifaKhanLab / RVDB
  A reference viral database (RVDB)
  ☆26Updated 6 years ago
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆54Updated 3 months ago
• fab-araujo / gofeat
  GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data
  ☆17Updated last year
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆80Updated 2 months ago
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆70Updated 11 months ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆29Updated 10 months ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆46Updated last year
• gavinmdouglas / picrust2_manuscript
  ☆24Updated 5 years ago