qiime2 / q2-feature-classifierLinks
QIIME 2 plugin supporting taxonomic classification
☆21Updated last month
Alternatives and similar repositories for q2-feature-classifier
Users that are interested in q2-feature-classifier are comparing it to the libraries listed below
Sorting:
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated 11 months ago
- R shiny app for interactive microbiome analysis☆56Updated 6 months ago
- shotgun pipeline☆12Updated 6 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated last year
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated last month
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆46Updated 3 weeks ago
- A catalogue of available long read sequencing data analysis tools☆83Updated 2 months ago
- (formerly eelpond) an automated RNA-Seq workflow system☆27Updated 5 years ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆31Updated 5 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆55Updated last year
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆37Updated 3 years ago
- A visualization tool for exploratory data analysis of metagenomic data☆37Updated 3 years ago
- Metagenomics Workshop☆28Updated 9 years ago
- This repository hosts a large collection of Nextflow snippets☆56Updated 10 months ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- A shiny package for microbiome functional enrichment analysis☆38Updated last week
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 2 years ago
- Implementation of Krona to QIIME2☆16Updated last year
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago
- A collection of modules and sub-workflows for Nextflow☆28Updated last month
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆28Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆42Updated 5 years ago
- TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region☆22Updated 2 weeks ago
- Protein Alignment and Detection Interface☆60Updated last year
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆59Updated 2 years ago
- SARS-CoV-2 workflow for nanopore sequence data☆42Updated this week