qiime2 / q2-feature-classifierLinks
QIIME 2 plugin supporting taxonomic classification
☆20Updated 2 months ago
Alternatives and similar repositories for q2-feature-classifier
Users that are interested in q2-feature-classifier are comparing it to the libraries listed below
Sorting:
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago
- A continually expanding collection of microbiome analysis tools☆18Updated 3 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- shotgun pipeline☆12Updated 6 years ago
- Evolutionary Transcriptomics with R☆46Updated 2 weeks ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing☆11Updated 8 months ago
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆37Updated 3 years ago
- A catalogue of available long read sequencing data analysis tools☆80Updated last month
- (formerly eelpond) an automated RNA-Seq workflow system☆27Updated 5 years ago
- highthroughput rRNA sequence classification and OTU mapping for metagenomic samples☆26Updated last year
- Protein Alignment and Detection Interface☆60Updated last year
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated last week
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 3 months ago
- A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes☆51Updated 9 months ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 9 months ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 6 months ago
- A visualization tool for exploratory data analysis of metagenomic data☆37Updated 3 years ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆59Updated 2 years ago
- Maximum likelihood demultiplexing☆48Updated 8 months ago
- A reference viral database (RVDB)☆26Updated 6 years ago
- SARS-CoV-2 workflow for nanopore sequence data☆42Updated 2 months ago
- Metagenomics Workshop☆28Updated 8 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Database of genomes integrated from the gut microbiome and other environments☆44Updated 2 years ago
- Pathoscope: Species identification and strain attribution with unassembled sequencing data☆59Updated 6 years ago
- Implementation of Krona to QIIME2☆16Updated last year
- Statistical analysis for sparse high-throughput sequencing☆69Updated 10 months ago
- R shiny app for interactive microbiome analysis☆56Updated 4 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆41Updated last year