qiime2 / q2-types
☆17Updated last month
Related projects ⓘ
Alternatives and complementary repositories for q2-types
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆75Updated this week
- A tool for domain based annotation with databases from the Conserved Domains Database☆30Updated 2 months ago
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆54Updated 10 months ago
- Similarity networks of biosynthetic gene clusters☆73Updated this week
- A Qiime plugin for MICOM.☆10Updated this week
- Scripts for calculating features and regression of prokaryote OGT☆25Updated 9 months ago
- A package to annotate protein sequences☆53Updated 4 months ago
- breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…☆149Updated 3 weeks ago
- VAPiD: Viral Annotation and Identification Pipeline☆51Updated 5 months ago
- Python package to study microbial communities using metabolic modeling.☆94Updated this week
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆37Updated 7 months ago
- Bioinformatics Tools☆81Updated 3 weeks ago
- Phage Annotation using Protein Structures☆87Updated last month
- Alignment viewer for linux terminal☆115Updated 3 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆141Updated last week
- Sample search by metadata and features☆45Updated last year
- A scalable bacterial genome assembly, annotation and analysis pipeline☆71Updated 11 months ago
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆91Updated 11 months ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆11Updated 11 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆128Updated this week
- Protein Alignment and Detection Interface☆61Updated 7 months ago
- Automated taxonomy decoration onto a tree☆15Updated last year
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆81Updated 6 years ago
- A user-friendly workflow for phylogenomics☆204Updated last month
- Pan-genome wide association studies☆150Updated 5 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆30Updated 8 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆118Updated last month
- ☆68Updated 3 years ago
- The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gu…☆20Updated 3 years ago
- A tool for agile functional analysis of shotgun metagenomic data☆23Updated 2 months ago