YDaiLab / MiMeNetLinks
☆18Updated 5 years ago
Alternatives and similar repositories for MiMeNet
Users that are interested in MiMeNet are comparing it to the libraries listed below
Sorting:
- http://huttenhower.sph.harvard.edu/waafle☆22Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆67Updated 2 weeks ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆43Updated 2 years ago
- Plot microbiome time series in parallel☆27Updated 2 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Updated 3 weeks ago
- MAG Circularization Method☆32Updated last month
- The Microbial Co-occurrence Network Explorer☆21Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆38Updated 3 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆40Updated last year
- Discover and annotate the virome☆54Updated 2 months ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- ☆45Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆41Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 10 months ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Updated 3 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆52Updated last year
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆23Updated 4 years ago
- Pipeline for major biological analyses.☆36Updated 3 years ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆24Updated 6 months ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆22Updated 4 months ago
- Prophage Activity Estimator☆29Updated last year
- gutSMASH☆55Updated 2 months ago