YDaiLab / MiMeNetLinks
☆18Updated 4 years ago
Alternatives and similar repositories for MiMeNet
Users that are interested in MiMeNet are comparing it to the libraries listed below
Sorting:
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last week
- http://huttenhower.sph.harvard.edu/waafle☆20Updated 9 months ago
- MAG Circularization Method☆32Updated 3 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆22Updated last year
- Pipeline for major biological analyses.☆35Updated 3 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆42Updated 2 years ago
- ☆45Updated 2 years ago
- Plot microbiome time series in parallel☆26Updated last year
- ☆40Updated 4 years ago
- KEGG Module Evaluation Tool☆31Updated last year
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆33Updated 3 weeks ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Discover and annotate the virome☆53Updated last week
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 8 months ago
- ☆27Updated 8 months ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆24Updated 4 months ago
- ☆30Updated last month
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Updated 3 years ago
- UFCG: Universal Fungal Core Genes☆34Updated 2 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- ☆13Updated 5 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆20Updated last month
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆27Updated last week
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆31Updated 5 years ago