Alternatives and similar repositories for MiMeNet:

Users that are interested in MiMeNet are comparing it to the libraries listed below

• SegataLab / cmseq
  Set of utilities on sequences and BAM files
  ☆26Updated 3 years ago
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆28Updated last year
• qiyunlab / binarena
  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
  ☆31Updated 5 months ago
• mgtools / MinPath
  MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…
  ☆20Updated 3 years ago
• biobakery / waafle
  http://huttenhower.sph.harvard.edu/waafle
  ☆11Updated last month
• SushiLab / omrgc_v2_scripts
  ☆11Updated last year
• acvill / bracken_plot
  A Shiny app for taxonomic abundance visualization
  ☆7Updated 9 months ago
• TingtZHENG / VirMiner
  Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates
  ☆18Updated 4 years ago
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 2 years ago
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 2 years ago
• leylabmpi / SynTracker
  SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…
  ☆26Updated last week
• elizabethmcd / metabolisHMM
  Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
  ☆18Updated 3 years ago
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆22Updated 6 months ago
• Shenhav-and-Korem-labs / SCRuB
  ☆28Updated last month
• WatsonLab / KOunt
  Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.
  ☆24Updated 4 months ago
• rotheconrad / KEGGDecoder-binder
  metabolic heatmap
  ☆19Updated 5 years ago
• ivlachos / agamemnon
  Accurate metagenomi/metatranscriptomic analysis pipeline
  ☆22Updated 3 years ago
• zjshi / snv_analysis_almeida2019
  ☆22Updated 5 years ago
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆32Updated 3 years ago
• Chartiza / Microbiome
  scripts for microbiome analysis
  ☆11Updated 6 months ago
• biobakery / shortbred
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…
  ☆28Updated 3 weeks ago
• gcremers / metascan
  Metabolic scanning and annotation of Metagenomes
  ☆10Updated last month
• ablab / viralComplete
  viralComplete: BLAST-based viral completeness verification
  ☆24Updated 3 years ago
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆31Updated last year
• joshuakirsch / pseudoR
  ☆15Updated 3 months ago
• LorMeBioAI / MBPD
  ☆15Updated 2 months ago
• NeLLi-team / gvclass
  ☆11Updated last month
• cmmr / EsViritu
  Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
  ☆23Updated last year
• pereiramemo / AGS-and-ACN-tools
  Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data
  ☆14Updated last month
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆34Updated 3 weeks ago