☆19Dec 15, 2020Updated 5 years ago
Alternatives and similar repositories for MiMeNet
Users that are interested in MiMeNet are comparing it to the libraries listed below
Sorting:
- ☆15Feb 3, 2023Updated 3 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆43Mar 26, 2024Updated last year
- BiomeNED main code☆12Jul 25, 2019Updated 6 years ago
- 2025 RAD microbes boot camp☆15Apr 30, 2025Updated 10 months ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆24Jun 9, 2021Updated 4 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- ☆18Dec 7, 2020Updated 5 years ago
- An algorithm for clustering metagenomic sequences.☆41Dec 12, 2025Updated 3 months ago
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 3 months ago
- Conversion software tool for producing both annotation and tree files for GraPhlAn☆11Feb 2, 2022Updated 4 years ago
- Fit LOg-RAtio Lasso regression for compositional covariates☆15Feb 8, 2026Updated last month
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- Metagenomics Workshop☆27Nov 23, 2016Updated 9 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated last year
- Code depository for papers☆27Oct 22, 2025Updated 4 months ago
- ☆11Dec 28, 2019Updated 6 years ago
- ☆15Dec 16, 2024Updated last year
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆13Jan 14, 2023Updated 3 years ago
- ☆13Jun 6, 2024Updated last year
- ☆78Oct 16, 2024Updated last year
- AnADAMA2 is the next generation of AnADAMA (Another Automated Data Analysis Management Application). AnADAMA is a tool to capture your wo…☆12Sep 8, 2025Updated 6 months ago
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- ☆34Sep 5, 2024Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆34Mar 12, 2026Updated last week
- A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.☆10Nov 10, 2025Updated 4 months ago
- ☆40Dec 16, 2023Updated 2 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆33Oct 1, 2024Updated last year
- Microbiome research☆21May 24, 2022Updated 3 years ago
- ☆38Dec 6, 2023Updated 2 years ago
- ☆14Oct 14, 2023Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Nov 9, 2022Updated 3 years ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15May 24, 2023Updated 2 years ago
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆16Nov 7, 2019Updated 6 years ago