A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations
☆13Nov 30, 2023Updated 2 years ago
Alternatives and similar repositories for q2view-old
Users that are interested in q2view-old are comparing it to the libraries listed below
Sorting:
- ☆23Nov 9, 2025Updated 3 months ago
- a tool for annotation of immunoglobulin genes in genome assemblies☆14Sep 22, 2025Updated 5 months ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Jan 6, 2026Updated last month
- ☆14Feb 4, 2026Updated last month
- qiime2 plugin for aldex2 for differential abundance analysis☆11Mar 5, 2020Updated 5 years ago
- The shiny app that accompanies the ngsReports R package☆13Jun 10, 2021Updated 4 years ago
- A QIIME 2 implementation of SMURF☆13Apr 27, 2022Updated 3 years ago
- Prototype graphical user interface for QIIME 2☆15Feb 27, 2023Updated 3 years ago
- MUMmer3☆17Jan 12, 2022Updated 4 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Command line interface for QIIME 2☆19Feb 17, 2026Updated 2 weeks ago
- Generate Galaxy tool descriptions automatically from QIIME 2 actions.☆20Jan 27, 2026Updated last month
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 4 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆23Jan 31, 2026Updated last month
- QIIME 2 plugin wrapping DADA2☆22Jan 27, 2026Updated last month
- Convert BAM files to bigWig files with a simple command☆20Nov 30, 2018Updated 7 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Aug 9, 2025Updated 6 months ago
- viralComplete: BLAST-based viral completeness verification☆24Oct 4, 2021Updated 4 years ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆24Feb 12, 2020Updated 6 years ago
- A mirror of official bio3d development site at Bitbucket: https://bitbucket.org/Grantlab/bio3d. See also bio3d website: http://thegrantl…☆27Apr 30, 2023Updated 2 years ago
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆28Aug 21, 2025Updated 6 months ago
- ☆21Apr 25, 2025Updated 10 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Aug 2, 2022Updated 3 years ago
- Vanilla regression methods for microbiome differential abundance analysis☆61Nov 3, 2020Updated 5 years ago
- Influenza genome analysis Nextflow workflow☆31Sep 15, 2025Updated 5 months ago
- Public Workflows at GNPS☆64Jan 30, 2024Updated 2 years ago
- MARS: improving Multiple circular sequence Alignment using Refined Sequences☆31May 2, 2025Updated 10 months ago
- For distributing patric related code☆27Dec 19, 2022Updated 3 years ago
- ☆31Oct 26, 2021Updated 4 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Nov 10, 2021Updated 4 years ago
- Linux open by handle based VFS implementation for nfs4j☆13Oct 24, 2025Updated 4 months ago
- Tools for visualising microbial community amplicon data☆72Nov 3, 2025Updated 4 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Jan 24, 2025Updated last year
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆41Feb 13, 2026Updated 2 weeks ago
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 4 years ago
- A single-cell transcriptomic analysis of endometriosis, endometriomas, eutopic endometrial samples and uninvolved ovary tissues highlight…☆18Jan 12, 2023Updated 3 years ago
- ☆10May 31, 2022Updated 3 years ago
- ☆12Jul 30, 2019Updated 6 years ago