qiime2 / q2-dada2Links
QIIME 2 plugin wrapping DADA2
☆21Updated this week
Alternatives and similar repositories for q2-dada2
Users that are interested in q2-dada2 are comparing it to the libraries listed below
Sorting:
- Tools for visualising microbial community amplicon data☆67Updated last week
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- diversity estimation under ecological networks☆84Updated last month
- Speedy versions of phyloseq functions☆48Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆38Updated 9 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- 16S taxonomy assignment using an ecosystem-specific database.☆17Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Simple R utilities for working with HMMER☆20Updated 10 months ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated last month
- R package for microbial pangenomics☆24Updated 3 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 4 months ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 4 months ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- functions for analyzing phyloseq data☆28Updated 6 months ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 3 weeks ago
- ☆27Updated last year
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Updated 6 years ago
- Robust Aitchison PCA from sparse count data☆36Updated 3 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Updated 9 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 7 years ago