qiime2 / q2-dada2Links
QIIME 2 plugin wrapping DADA2
☆21Updated last week
Alternatives and similar repositories for q2-dada2
Users that are interested in q2-dada2 are comparing it to the libraries listed below
Sorting:
- Tools for visualising microbial community amplicon data☆67Updated 3 months ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Speedy versions of phyloseq functions☆48Updated last year
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 2 weeks ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆38Updated 9 years ago
- diversity estimation under ecological networks☆84Updated last week
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Genome wide orthology inference and dNdS estimation☆95Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Simple R utilities for working with HMMER☆20Updated 10 months ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- R package for microbial pangenomics☆24Updated 3 years ago
- 16S taxonomy assignment using an ecosystem-specific database.☆17Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 3 months ago
- ☆67Updated 9 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Metagenomic AnalySis with QUantitative pipEline☆12Updated 6 years ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 7 years ago
- Fungal Genome Mapping Pipeline☆19Updated 6 years ago
- Species richness with high diversity☆67Updated this week
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Updated 6 years ago
- ☆27Updated last year
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆47Updated last week
- Working with the outputs of sourmash in R☆28Updated last year
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- R We There Yet?☆31Updated 4 months ago