Alternatives and similar repositories for emperor

Users that are interested in emperor are comparing it to the libraries listed below

• biocore / biom-format
  The Biological Observation Matrix (BIOM) Format Project
  ☆97Updated last month
• spacegraphcats / spacegraphcats
  Indexing & querying large assembly graphs -- in space, no one can hear you miao!
  ☆118Updated last week
• MG-RAST / pipeline
  The MG-RAST pipeline
  ☆25Updated 3 years ago
• trvrb / dynamics-practical
  Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data
  ☆33Updated 12 years ago
• stevetsa / awesome-microbes
  List of computational resources for analyzing microbial sequencing data.
  ☆67Updated 2 months ago
• zhaoyanswill / RAPSearch2
  Reduced Alphabet based Protein similarity Search
  ☆40Updated 5 years ago
• qiime2 / docs
  ☆21Updated 9 months ago
• biocore / redbiom
  Sample search by metadata and features
  ☆47Updated 2 years ago
• dkoslicki / MetaPalette
  Metagenomic profiling and phylogenetic distances via common kmers
  ☆42Updated 4 years ago
• alesssia / YAMP
  YAMP: Yet Another Metagenomic Pipeline
  ☆62Updated 2 years ago
• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆83Updated 2 months ago
• qiita-spots / qiita
  Qiita - A multi-omics databasing effort
  ☆128Updated this week
• biocore / gneiss
  compositional data analysis toolbox
  ☆60Updated 3 years ago
• dib-lab / dammit
  just annotate it, dammit!
  ☆93Updated 2 years ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆98Updated 2 years ago
• katholt / plotTree
  ☆68Updated 9 years ago
• microgenomics / tutorials
  In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…
  ☆84Updated 7 years ago
• brentp / pyfasta
  fast, memory-efficient, pythonic (and command-line) access to fasta sequence files
  ☆86Updated 8 years ago
• qunfengdong / BLCA
  ☆35Updated 2 years ago
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆64Updated 7 years ago
• merenlab / illumina-utils
  A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).
  ☆94Updated 2 months ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆53Updated 3 years ago
• MG-RAST / MG-RAST
  The MG-RAST Backend -- the API server
  ☆46Updated 2 years ago
• sanger-pathogens / iva
  de novo virus assembler of Illumina paired reads
  ☆58Updated 4 years ago
• marbl / metAMOS
  A metagenomic and isolate assembly and analysis pipeline built with AMOS
  ☆94Updated 8 years ago
• chrisquince / DESMAN
  De novo Extraction of Strains from MetAgeNomes
  ☆72Updated 5 years ago
• jameshadfield / phandango
  an interactive viewer for populations of bacterial genomes linked by a phylogeny
  ☆129Updated last year
• sjspielman / pyvolve
  Python library to simulate evolutionary sequence data
  ☆80Updated 4 years ago
• vsbuffalo / scythe
  A 3'-end adapter contaminant trimmer
  ☆95Updated 8 years ago
• fhcrc / seqmagick
  An imagemagick-like frontend to Biopython SeqIO
  ☆117Updated last year