biocore / emperor
Emperor a tool for the analysis and visualization of large microbial ecology datasets
☆54Updated last year
Alternatives and similar repositories for emperor:
Users that are interested in emperor are comparing it to the libraries listed below
- Deprecated : Use https://github.com/drpowell/degust☆44Updated 7 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated this week
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆33Updated last week
- Reduced Alphabet based Protein similarity Search☆40Updated 4 years ago
- Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm☆18Updated 10 years ago
- compositional data analysis toolbox☆59Updated 2 years ago
- List of computational resources for analyzing microbial sequencing data.☆68Updated last year
- ☆21Updated 3 months ago
- The MG-RAST Backend -- the API server☆45Updated last year
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Sample search by metadata and features☆47Updated last year
- Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler☆24Updated 6 years ago
- Robust Aitchison PCA from sparse count data☆33Updated 2 years ago
- Lesson on data analysis and visualization in R for genomics☆42Updated 6 years ago
- ☆34Updated last year
- Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies☆26Updated 2 years ago
- Pathoscope: Species identification and strain attribution with unassembled sequencing data☆56Updated 5 years ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 6 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 3 months ago
- ☆23Updated 6 years ago
- The Biological Observation Matrix (BIOM) Format Project☆93Updated 4 months ago
- Qiita - A multi-omics databasing effort☆124Updated last month
- Visualise interstrain recombination from environmental samples.☆26Updated 5 years ago
- YAMP: Yet Another Metagenomic Pipeline☆58Updated last year
- tutorials for 2015 EDAMAME☆24Updated 7 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆121Updated last year
- SHallow shOtGUN profiler☆53Updated 3 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Code from the Edwards lab, including bioinformatics, image analysis and more. All this code is created and maintained by folks at Rob Edw…☆40Updated last week
- Workshop materials for shotgun metagenomics☆36Updated 7 years ago