Emperor a tool for the analysis and visualization of large microbial ecology datasets
☆54Jan 12, 2026Updated 6 months ago
Alternatives and similar repositories for emperor
Users that are interested in emperor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Prototype graphical user interface for QIIME 2☆15Feb 27, 2023Updated 3 years ago
- qiime2 plugin for aldex2 for differential abundance analysis☆11Mar 5, 2020Updated 6 years ago
- The Biological Observation Matrix (BIOM) Format Project☆98Jun 1, 2026Updated last month
- Programs and documentation for the SAMSA pipeline, version 1.0☆16Dec 16, 2019Updated 6 years ago
- A package for creating and managing sample identifiers in comparative -omics datasets.☆23Jan 30, 2017Updated 9 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Alignment editor for Mac OS X☆29Aug 1, 2017Updated 8 years ago
- ☆21Apr 25, 2025Updated last year
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- A visualization tool for exploratory data analysis of metagenomic data☆40Mar 22, 2022Updated 4 years ago
- Companion notebooks for "Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks"☆11Jul 13, 2018Updated 8 years ago
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆31Apr 11, 2023Updated 3 years ago
- Automated taxonomy decoration onto a tree☆17Jul 16, 2026Updated last week
- A robust and fast clustering method for amplicon-based studies☆148Updated this week
- ☆43Oct 10, 2025Updated 9 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Various scripts used at the EnvGen group, directed towards metagenomic analysis.☆15Apr 28, 2020Updated 6 years ago
- Rachis Framework (Formerly Known as QIIME 2 Framework (Q2F))☆529Updated this week
- A fast and scalable phylogenetic tree viewer for microbiome data analysis☆56Aug 4, 2024Updated last year
- Generate Galaxy tool descriptions automatically from QIIME 2 actions.☆20May 15, 2026Updated 2 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆25Jan 24, 2024Updated 2 years ago
- Code used in MiCE 8992 Spring 2016☆43Apr 19, 2016Updated 10 years ago
- ☆43Jul 31, 2017Updated 8 years ago
- ☆24May 6, 2020Updated 6 years ago
- R package containing functions for assessing the replication/preservation of network topology for weighted gene coexpression network modu…☆13Apr 12, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Case-control matching for microbiome data☆10Aug 8, 2023Updated 2 years ago
- A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations☆13Nov 30, 2023Updated 2 years ago
- Woltka: a versatile meta'omic data classifier☆80Sep 8, 2025Updated 10 months ago
- An interactive web application for demonstrating and using phyloseq.☆60Jul 18, 2019Updated 7 years ago
- A metagenomic and isolate assembly and analysis pipeline built with AMOS☆92Nov 20, 2017Updated 8 years ago
- Bayesian Inferential Regression for Differential Microbiome Analysis☆25Jun 5, 2026Updated last month
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆61Dec 21, 2022Updated 3 years ago
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing☆11Mar 16, 2026Updated 4 months ago
- Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.☆285Dec 19, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 5 years ago
- A simple keylogger for macOS☆22Sep 29, 2021Updated 4 years ago
- Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…☆279Jan 13, 2026Updated 6 months ago
- Vanilla regression methods for microbiome differential abundance analysis☆62Nov 3, 2020Updated 5 years ago
- Command line client and Python libraries for CosmosID API☆13Oct 28, 2025Updated 8 months ago
- ☆15Aug 28, 2014Updated 11 years ago
- Recipes for bioinformatics analyses with scikit-bio☆49Sep 8, 2025Updated 10 months ago