biocore / unifracLinks
☆41Updated 5 months ago
Alternatives and similar repositories for unifrac
Users that are interested in unifrac are comparing it to the libraries listed below
Sorting:
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Updated last year
- SHallow shOtGUN profiler☆53Updated 3 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆50Updated 3 years ago
- A visualization tool for exploratory data analysis of metagenomic data☆37Updated 3 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated last month
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Database of genomes integrated from the gut microbiome and other environments☆44Updated 2 years ago
- de novo virus assembler of Illumina paired reads☆57Updated 4 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- ☆84Updated 2 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆40Updated last year
- Rapid and scalable homolog identification for bacterial genomes☆33Updated 6 years ago
- Genome wide orthology inference and dNdS estimation☆96Updated last month
- Statistical analysis for sparse high-throughput sequencing☆69Updated 9 months ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆66Updated 3 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Gene-flank analysis tool☆30Updated 9 months ago
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆83Updated 10 months ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated last month
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- Visualize whole genome alignments as linear maps☆73Updated 2 months ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Sparse Cooccurence Network Investigation for Compositional data☆25Updated 11 months ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆58Updated 2 years ago