biocore / unifrac
☆41Updated last week
Alternatives and similar repositories for unifrac:
Users that are interested in unifrac are comparing it to the libraries listed below
- ☆23Updated 6 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 2 years ago
- ☆32Updated last year
- Statistical analysis for sparse high-throughput sequencing☆69Updated 4 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 4 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 3 months ago
- Rarefaction scripts☆17Updated last year
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 8 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- Rapid and scalable homolog identification for bacterial genomes☆33Updated 5 years ago
- Workshop materials for shotgun metagenomics☆36Updated 7 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆47Updated 3 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated 11 months ago
- TAXnomic Profile Aggregation and STAndardisation☆39Updated 5 months ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 5 months ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆56Updated 2 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- highthroughput rRNA sequence classification and OTU mapping for metagenomic samples☆24Updated last year
- OPAL: Open-community Profiling Assessment tooL☆28Updated 3 months ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- De novo Extraction of Strains from MetAgeNomes☆68Updated 4 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆57Updated 7 months ago
- ☆26Updated 4 years ago