kevinmcgregor / mdine

Related projects ⓘ

Alternatives and complementary repositories for mdine

• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆24Updated last year
• elizabethmcd / metabolisHMM
  Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
  ☆18Updated 2 years ago
• d-mcgrath / MetaPathPredict
  A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.
  ☆16Updated 3 weeks ago
• rotheconrad / KEGGDecoder-binder
  metabolic heatmap
  ☆18Updated 5 years ago
• LottePronk / whokaryote
  Classify metagenomic contigs as eukaryotic or prokaryotic
  ☆31Updated last year
• YDaiLab / MiMeNet
  ☆19Updated 3 years ago
• Xiaoyu2425 / mEQO
  ☆15Updated last year
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆26Updated 5 months ago
• Chartiza / Microbiome
  scripts for microbiome analysis
  ☆11Updated 4 months ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆49Updated 4 years ago
• putonti / virMine
  ☆18Updated 2 years ago
• lozuponelab / SCNIC
  Sparse Cooccurence Network Investigation for Compositional data
  ☆23Updated 3 weeks ago
• valdeanda / mebs
  Protocol for finding informative protein families and then using them to score omic samples
  ☆17Updated 2 years ago
• SegataLab / cmseq
  Set of utilities on sequences and BAM files
  ☆25Updated 3 years ago
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆26Updated last year
• functional-dark-side / agnostos-wf
  ☆43Updated last year
• allind / EukDetect
  ☆45Updated 7 months ago
• qiyunlab / binarena
  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
  ☆29Updated 3 months ago
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 2 years ago
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆30Updated 2 weeks ago
• kelwyres / Bactabolize
  ☆35Updated 2 weeks ago
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆29Updated 2 years ago
• WatsonLab / KOunt
  Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.
  ☆24Updated last month
• pereiramemo / AGS-and-ACN-tools
  Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data
  ☆14Updated 3 years ago
• arumugamlab / MIntO
  Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data
  ☆14Updated 2 weeks ago
• patrickwest / EukRep_Pipeline
  ☆24Updated 5 years ago
• metaGmetapop / metapop
  A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
  ☆38Updated last year
• biovcnet / topic-metagenomics
  A repository for the lessons and notebooks used for Binder tutorials
  ☆19Updated 4 years ago
• AlexanderLabWHOI / EukHeist
  ☆23Updated last year
• jlw-ecoevo / gRodon
  ☆17Updated last year