compmetagen / miccaLinks
micca - MICrobial Community Analysis
☆20Updated 5 years ago
Alternatives and similar repositories for micca
Users that are interested in micca are comparing it to the libraries listed below
Sorting:
- Interactive tools for metagenome visualization and binning in R☆27Updated 7 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Updated last year
- Confirming specific taxonomic groups within your samples.☆19Updated 4 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated 2 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Tools for visualising microbial community amplicon data☆70Updated last month
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 7 months ago
- ☆67Updated 9 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 3 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 11 months ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆59Updated 2 years ago
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Updated 7 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31Updated 4 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆33Updated 2 weeks ago
- ☆28Updated last year
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆24Updated 2 years ago
- ☆17Updated 7 years ago