compmetagen / miccaLinks
micca - MICrobial Community Analysis
β20Updated 5 years ago
Alternatives and similar repositories for micca
Users that are interested in micca are comparing it to the libraries listed below
Sorting:
- Schloss Lab Tools for Reproducible Microbiome Research π©β31Updated last year
- Interactive tools for metagenome visualization and binning in Rβ28Updated 7 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)β38Updated last year
- A set of R scripts for the analysis of microbial profilesβ41Updated last year
- Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholmβ18Updated 11 years ago
- Automated pipeline for analyses of fungal ITS from the Illuminaβ31Updated 3 months ago
- Tools for visualising microbial community amplicon dataβ67Updated 3 months ago
- Metagenomic profiling and phylogenetic distances via common kmersβ42Updated 4 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.β34Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBIβ29Updated 6 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studiβ¦β34Updated 4 years ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16sβ58Updated 2 years ago
- SHallow shOtGUN profilerβ54Updated 3 years ago
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)β19Updated 6 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.β31Updated last week
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairsβ52Updated last year
- Tools for extracting individual genomes from metagenomesβ17Updated last year
- Utility program for extracting sequences from a fasta/fastq fileβ36Updated 7 months ago
- β23Updated 7 years ago
- QIIME 2 plugin wrapping DADA2β21Updated last week
- Speedy versions of phyloseq functionsβ48Updated last year
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)β18Updated 3 years ago
- Tool to easily install QIIME's dependencies on Linux systemsβ33Updated 9 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a β¦β46Updated 3 years ago
- functions for analyzing phyloseq dataβ28Updated 6 months ago
- Handy tools for Microbiome analysis in Rβ18Updated 6 years ago
- β35Updated last year
- Parse NCBI taxonomy and accessions to find taxonomic assignmentsβ77Updated 2 weeks ago
- Advanced metagenomic Sequence Analysis in Rβ15Updated 6 years ago
- β17Updated 7 years ago