compmetagen / micca
micca - MICrobial Community Analysis
☆20Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for micca
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆29Updated last year
- Metagenomics Analysis Tools☆25Updated 6 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Interactive tools for metagenome visualization and binning in R☆28Updated 6 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- ☆23Updated 6 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated 11 months ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆23Updated 3 years ago
- functions for analyzing phyloseq data☆26Updated 3 months ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆30Updated 3 months ago
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Updated 6 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated last year
- Speedy versions of phyloseq functions☆46Updated 7 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated 2 years ago
- ☆38Updated 4 months ago
- Phylogenetic Isometric Log Ratio☆19Updated last month
- ☆21Updated last year
- A set of R scripts for the analysis of microbial profiles☆40Updated 6 months ago
- Tutorial on using E-utilities☆19Updated 3 years ago
- Pipeline to generate NGS reads from a phylogeny☆37Updated 2 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆45Updated last year
- MicrobeDirectory 2.0☆22Updated 4 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated last year
- ☆34Updated last year
- Sparse Cooccurence Network Investigation for Compositional data☆23Updated 3 weeks ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- A comprehensive pipeline for short read metagenomic data☆24Updated 4 years ago