biocore / qurro

Related projects ⓘ

Alternatives and complementary repositories for qurro

• biocore / DEICODE
  Robust Aitchison PCA from sparse count data
  ☆33Updated 2 years ago
• lozuponelab / SCNIC
  Sparse Cooccurence Network Investigation for Compositional data
  ☆23Updated 3 weeks ago
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆24Updated last year
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated 7 months ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆45Updated last year
• biocore / songbird
  Vanilla regression methods for microbiome differential abundance analysis
  ☆59Updated 4 years ago
• snayfach / IGGdb
  Database of genomes integrated from the gut microbiome and other environments
  ☆44Updated last year
• ggloor / q2-aldex2
  qiime2 plugin for aldex2 for differential abundance analysis
  ☆10Updated 4 years ago
• knightlab-analyses / reference-frames
  ☆21Updated 4 years ago
• functional-dark-side / agnostos-wf
  ☆43Updated last year
• czbiohub-sf / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆36Updated 2 months ago
• jlw-ecoevo / gRodon
  ☆17Updated last year
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆54Updated 2 years ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆53Updated 4 months ago
• ohlab / SMEG
  Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset
  ☆20Updated 4 years ago
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆19Updated last year
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆26Updated 6 years ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆52Updated 2 months ago
• victoriapascal / gutsmash
  gutSMASH
  ☆52Updated last month
• metageni / SUPER-FOCUS
  A tool for agile functional analysis of shotgun metagenomic data
  ☆23Updated 2 months ago
• FrederickHuangLin / ANCOM-BC-Code-Archive
  Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …
  ☆30Updated 4 years ago
• thomazbastiaanssen / Tjazi
  A microbiome analysis toolkit for R
  ☆21Updated last year
• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆34Updated 7 months ago
• gavinmdouglas / picrust2_manuscript
  ☆20Updated 4 years ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆29Updated 2 years ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆27Updated 3 months ago
• xiaoli-dong / metaerg
  ☆42Updated 3 years ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆32Updated last year
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆53Updated 2 months ago
• biocore / BIRDMAn
  Bayesian Inferential Regression for Differential Microbiome Analysis
  ☆22Updated 11 months ago