biocore / redbiomLinks
Sample search by metadata and features
☆48Updated 2 years ago
Alternatives and similar repositories for redbiom
Users that are interested in redbiom are comparing it to the libraries listed below
Sorting:
- Protein Alignment and Detection Interface☆61Updated last year
- Woltka: a versatile meta'omic data classifier☆76Updated 5 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- SHallow shOtGUN profiler☆54Updated 3 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 8 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆63Updated 11 months ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 6 years ago
- Vanilla regression methods for microbiome differential abundance analysis☆59Updated 4 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 10 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Updated last year
- MEGAN Community Edition☆73Updated last year
- The Biological Observation Matrix (BIOM) Format Project☆95Updated last month
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆47Updated 2 weeks ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆83Updated 9 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆74Updated 2 years ago
- ☆23Updated 7 years ago
- Scripts and libraries for Environmental Genomics☆38Updated 6 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- StrainFinder☆28Updated 7 years ago
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆67Updated 5 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 5 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Microbiome classification pipeline☆66Updated 3 months ago
- Visualization of the pan-genome output by panX☆63Updated 2 months ago
- Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.☆32Updated 2 years ago