☆11Oct 25, 2022Updated 3 years ago
Alternatives and similar repositories for pyTCR
Users that are interested in pyTCR are comparing it to the libraries listed below
Sorting:
- ☆13Dec 15, 2021Updated 4 years ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 7 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Jan 15, 2023Updated 3 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Oct 6, 2021Updated 4 years ago
- ☆22Sep 20, 2022Updated 3 years ago
- ⚙️ A lightweight immune repertoire browser☆27Dec 10, 2019Updated 6 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆27Oct 1, 2022Updated 3 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Nov 9, 2022Updated 3 years ago
- flexible CDR based distance metrics☆71Dec 16, 2025Updated 2 months ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆36Mar 29, 2022Updated 3 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆85Mar 20, 2025Updated 11 months ago
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 4 years ago
- ☆10Jan 24, 2021Updated 5 years ago
- A collection of functions compatible with the Opentrons API☆10Oct 28, 2022Updated 3 years ago
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- Single-cell genomic sequencing of the human gut microbiome☆12Jun 12, 2024Updated last year
- OpenChord is a Python library for creating chord diagrams.☆11Feb 4, 2025Updated last year
- ☆12Jan 31, 2023Updated 3 years ago
- Locate transgenic insertion sites☆11Mar 14, 2023Updated 2 years ago
- This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also…☆11Mar 9, 2020Updated 5 years ago
- ☆41Jun 24, 2025Updated 8 months ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆96Dec 4, 2020Updated 5 years ago
- ☆41Aug 18, 2020Updated 5 years ago
- ☆18Jan 20, 2026Updated last month
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated last month
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Dec 4, 2025Updated 2 months ago
- Predicting T Cell Receptor Specificity with Deep Learning☆10Jul 17, 2019Updated 6 years ago
- Porting of Protein Activity and Pathway Inference to single cell and Python.☆12Feb 10, 2026Updated 2 weeks ago
- A public clone of the HypoMap Figure & analysis repository.☆11Sep 26, 2022Updated 3 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- ☆10Oct 30, 2023Updated 2 years ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆12Jan 10, 2024Updated 2 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- ☆14Aug 5, 2022Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆46Jul 19, 2024Updated last year
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 8 years ago