schumacherlab / STAPLER
STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint TCRab-peptide input to predict TCRab-peptide specificity.
☆26Updated this week
Alternatives and similar repositories for STAPLER:
Users that are interested in STAPLER are comparing it to the libraries listed below
- HLA-II ligand predictor.☆43Updated 2 years ago
- ☆9Updated 2 years ago
- ☆39Updated 3 weeks ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆18Updated 3 weeks ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆15Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆68Updated 2 years ago
- ☆19Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆32Updated 3 years ago
- ☆24Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆74Updated last year
- HLA-I ligand predictor☆37Updated 4 months ago
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆15Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆52Updated last year
- MaveDB API☆13Updated 2 weeks ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆36Updated 6 months ago
- ☆16Updated 3 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆33Updated 3 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆53Updated 2 years ago
- ☆73Updated last year
- Collection of papers related to BCR repertoire analyses☆18Updated 3 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- Machine learning-driven antibody design☆55Updated last year
- ☆25Updated 4 months ago
- Cross-protein transfer learning for variant effect prediction☆20Updated last year
- Antibody-Specific Epitope Mapping☆12Updated 5 months ago
- ☆24Updated last month
- ☆11Updated last year
- PRedictor of IMmunogenic Epitopes☆18Updated 11 months ago
- ☆9Updated last year
- ☆21Updated 2 years ago