schumacherlab / STAPLERLinks
STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint TCRab-peptide input to predict TCRab-peptide specificity.
☆27Updated 2 months ago
Alternatives and similar repositories for STAPLER
Users that are interested in STAPLER are comparing it to the libraries listed below
Sorting:
- python tools for TCR:peptide-MHC modeling and analysis☆79Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆70Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆32Updated 3 years ago
- ☆9Updated 2 years ago
- ☆41Updated 3 months ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆54Updated 3 years ago
- HLA-I ligand predictor☆41Updated 6 months ago
- ☆74Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆39Updated 10 months ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- Cross-protein transfer learning for variant effect prediction☆20Updated last year
- ☆19Updated 2 years ago
- ☆17Updated 4 years ago
- ☆49Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆89Updated last year
- MaveDB API☆12Updated last week
- ☆25Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆53Updated last year
- Evolutionary velocity with protein language models☆93Updated last year
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆15Updated last year
- ☆29Updated 2 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆62Updated 11 months ago
- Python package and command line tool for epitope prediction☆51Updated 11 months ago
- Predict the structure of immune receptor proteins☆51Updated 8 months ago
- ☆35Updated 6 months ago
- ☆26Updated 6 months ago
- AbEpiTope-1.0 is a computational tool that features two scores: AbEpiScore-1.0, designed for assessing the accuracy of modelled AbAg inte…☆18Updated last week
- ☆40Updated 3 years ago
- Evolutionary conservation estimation of residues or nucleotides☆45Updated 3 years ago