schumacherlab / STAPLER
STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint TCRab-peptide input to predict TCRab-peptide specificity.
☆26Updated 3 weeks ago
Alternatives and similar repositories for STAPLER
Users that are interested in STAPLER are comparing it to the libraries listed below
Sorting:
- HLA-II ligand predictor.☆43Updated 2 years ago
- ☆9Updated 2 years ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆16Updated last year
- ☆40Updated last month
- ☆19Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆32Updated 3 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆53Updated 3 years ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆18Updated last month
- python tools for TCR:peptide-MHC modeling and analysis☆75Updated last year
- MaveDB API☆13Updated this week
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆68Updated 2 years ago
- HLA-I ligand predictor☆39Updated 4 months ago
- ☆25Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆53Updated last year
- Cross-protein transfer learning for variant effect prediction☆20Updated last year
- TEINet: a deep learning framework for prediction of TCR-epitope binding specificity☆15Updated last year
- ☆24Updated last week
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆15Updated last year
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆19Updated 10 months ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆35Updated 8 months ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆36Updated 7 months ago
- ☆36Updated 4 months ago
- TCR validated database☆13Updated last week
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- ☆9Updated last year
- ☆73Updated last year
- ☆17Updated 3 years ago
- Antibody-Specific Epitope Mapping☆12Updated 6 months ago
- Machine learning-driven antibody design☆55Updated last year
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆33Updated 3 years ago