schumacherlab / STAPLERLinks
STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint TCRab-peptide input to predict TCRab-peptide specificity.
☆28Updated 8 months ago
Alternatives and similar repositories for STAPLER
Users that are interested in STAPLER are comparing it to the libraries listed below
Sorting:
- python tools for TCR:peptide-MHC modeling and analysis☆84Updated last year
- ☆21Updated 3 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆57Updated 3 years ago
- TCR validated database☆43Updated 7 months ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆39Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆74Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Updated 3 years ago
- ☆85Updated 2 years ago
- ☆45Updated 9 months ago
- ☆25Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆42Updated last year
- MaveDB API☆15Updated last week
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Code repository of "Deep generative design of RNA family sequences"☆40Updated last month
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆17Updated last year
- Cross-protein transfer learning for variant effect prediction☆20Updated 2 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Updated 3 weeks ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆58Updated last week
- ☆52Updated 2 years ago
- HLA-I ligand predictor☆43Updated 3 months ago
- GraphPart, a data partitioning method for ML on biological sequences☆32Updated 2 years ago
- ☆17Updated 4 years ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- Evolutionary velocity with protein language models☆94Updated 3 weeks ago
- Python package and command line tool for epitope prediction☆52Updated last year
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆30Updated 5 months ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆46Updated 2 months ago
- ☆29Updated last year
- ☆36Updated 11 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year