TEINet: a deep learning framework for prediction of TCR-epitope binding specificity
☆16Jun 30, 2023Updated 3 years ago
Alternatives and similar repositories for TEINet
Users that are interested in TEINet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Mar 22, 2024Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆36Apr 1, 2022Updated 4 years ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17May 22, 2023Updated 3 years ago
- HLA-I ligand predictor☆47Mar 19, 2026Updated 6 months ago
- ☆11Jan 2, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆19Jun 11, 2026Updated 4 months ago
- ☆22Oct 4, 2022Updated 4 years ago
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆14Nov 7, 2024Updated last year
- A unified cross-attention model for predicting antigen binding specificity to both HLA and TCR molecules☆16May 29, 2026Updated 4 months ago
- Altered TCR Ligand Affinities and Structures☆13Dec 1, 2023Updated 2 years ago
- ☆11Nov 11, 2023Updated 2 years ago
- Automate new Mac setup☆24Feb 12, 2026Updated 8 months ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 5 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆97Jun 26, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- OpenChord is a Python library for creating chord diagrams.☆11Feb 4, 2025Updated last year
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- De novo VIral Genome Annotator☆25Jan 11, 2026Updated 9 months ago
- ☆17Jun 24, 2021Updated 5 years ago
- A database of T-cell receptor sequences☆11Aug 6, 2025Updated last year
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆54Jan 7, 2026Updated 9 months ago
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆18Apr 22, 2024Updated 2 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆37Mar 29, 2022Updated 4 years ago
- Git-based antigen specificity database storage & management.☆157Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆29Apr 22, 2025Updated last year
- Official PyTorch implementation of "ProteinMAE: Masked Autoencoder for Protein Surface Self-supervised Learning".☆19May 7, 2024Updated 2 years ago
- pygor3 repository☆10Nov 20, 2025Updated 10 months ago
- a toolbox for the manipulation, modelling and analysis of molecular structures☆28Oct 5, 2026Updated last week
- [ICLR'26] Towards All-Atom Foundation Models for Biomolecular Binding Affinity Prediction☆24Jul 9, 2026Updated 3 months ago
- // PROJECT PAUSED FOR NOW (lack of capacity) // Protein cavity identification and automatic subpocket decomposition☆46Jul 23, 2023Updated 3 years ago
- ☆11Oct 25, 2022Updated 3 years ago
- ☆19Sep 22, 2025Updated last year
- Parsing MHC nomenclature in the wild☆21Sep 23, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Unified all-atom structure-conditioned molecule generation☆22Nov 21, 2025Updated 10 months ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆43Oct 15, 2025Updated 11 months ago
- ☆10Feb 18, 2020Updated 6 years ago
- Scripts for calculating RESP charges with Gaussian, starting only with .xyz file of your compound. Generate .mol2, .frcmod and .pdb with …☆10Mar 26, 2019Updated 7 years ago
- Biological sequence visualization functions in R☆13May 28, 2026Updated 4 months ago
- A curated list of awesome Bayesian statistics blogs and resources☆24Nov 12, 2023Updated 2 years ago
- ☆41Aug 18, 2020Updated 6 years ago