pmeysman / TCRclusteringPaper
Comparative evaluation of different methods for TCR clustering
☆12Updated 6 years ago
Alternatives and similar repositories for TCRclusteringPaper:
Users that are interested in TCRclusteringPaper are comparing it to the libraries listed below
- HLA-II ligand predictor.☆38Updated last year
- flexible CDR based distance metrics☆57Updated 5 months ago
- Code and data used in The Great Repertoire Project☆29Updated 3 years ago
- ☆37Updated 4 years ago
- predicting peptide and TCR interaction☆20Updated 3 years ago
- ☆38Updated last year
- Deep Learning Method to Identify Cancer Associated TCRs☆45Updated 2 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆79Updated 3 years ago
- HTS-compatible wrapper for IgBlast V-(D)-J mapping tool☆52Updated 2 months ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆49Updated 3 years ago
- ☆47Updated 2 years ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆15Updated last week
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆29Updated 2 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆64Updated this week
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆13Updated 4 years ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆57Updated last week
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆27Updated last year
- Collection of papers related to BCR repertoire analyses☆17Updated 2 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆90Updated 4 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆23Updated last year
- Absolve antibody variable domain sequence analysis☆16Updated 6 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆16Updated 2 years ago
- Immunoglobulin and T-Cell receptor rearrangement software☆47Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated last year
- Rep-Seq data analysis tutorial☆11Updated 7 years ago
- An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.☆20Updated last year
- R package for functionally scoring phosphorylation sites☆19Updated 5 years ago
- A visualization software for antibody multi sequence alignment☆17Updated 7 months ago
- Connectivity Map analysis in MATLAB☆42Updated 3 years ago