naity / tcr_classifier
Predicting T Cell Receptor Specificity with Deep Learning
☆10Updated 5 years ago
Alternatives and similar repositories for tcr_classifier:
Users that are interested in tcr_classifier are comparing it to the libraries listed below
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- JEME method for predicting enhancer targets☆11Updated 7 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ☆25Updated 4 years ago
- ☆14Updated 4 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- CircRNA testing and ploting R package☆9Updated 4 years ago
- HOT regions paper☆11Updated 5 years ago
- ☆17Updated 11 months ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 8 years ago
- Targeted and non-targeted anticancer drugs and drug regimens☆28Updated last month
- Differential Mutation Analysis☆11Updated 4 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- BPNet manuscript code.☆11Updated 4 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Data analysis scripts for Rendeiro et. al, 2016 (doi:10.1038/ncomms11938)☆9Updated 7 years ago
- Materials presented at the BiocNYC meet-up☆12Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- ☆16Updated 2 years ago
- ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data☆21Updated 10 months ago
- a R package to identify neoantigens from NGS data☆19Updated 7 years ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆16Updated 5 years ago
- 🐶 hlabud: HLA genotype analysis in R☆16Updated last week
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Updated 7 years ago
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆17Updated last year
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆25Updated last year
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆13Updated this week
- 📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.☆20Updated 11 months ago