A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.
☆23Sep 10, 2023Updated 2 years ago
Alternatives and similar repositories for RTCR
Users that are interested in RTCR are comparing it to the libraries listed below
Sorting:
- [DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.☆40Jun 8, 2020Updated 5 years ago
- Detecting TCR involved in immune responses from single RepSeq datasets☆27Jun 17, 2019Updated 6 years ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆27Dec 16, 2021Updated 4 years ago
- Python library for immune repertoire analysis☆17Updated this week
- A RepSeq processing swiss-knife☆41Mar 29, 2024Updated last year
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆52Jan 7, 2026Updated last month
- An algorithm for error-correction of immunosequencing Illumina MiSeq reads and immunoproteogenomic analysis☆18Nov 1, 2018Updated 7 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆64Nov 18, 2025Updated 3 months ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Oct 6, 2021Updated 4 years ago
- Vidjil -- High-throughput Analysis of V(D)J Immune Repertoire (mirror, please go to http://gitlab.vidjil.org)☆31Dec 16, 2025Updated 2 months ago
- An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.☆21Nov 19, 2025Updated 3 months ago
- Highly informative TCR representation model☆15Nov 26, 2025Updated 3 months ago
- Predicting T Cell Receptor Specificity with Deep Learning☆10Jul 17, 2019Updated 6 years ago
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Dec 8, 2022Updated 3 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Jan 21, 2022Updated 4 years ago
- Decombinator v5: fast, error-correcting analysis of TCR repertoires☆27Updated this week
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 8 years ago
- Interactive browser for the VDJdb database☆15Updated this week
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago
- Ultrafast TCR clustering algorithm based on geometric isometry☆73Oct 16, 2024Updated last year
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- HTS-compatible wrapper for IgBlast V-(D)-J mapping tool☆53Oct 29, 2024Updated last year
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆62Updated this week
- B-cell repertoire and clonal family tree explorer☆17Feb 11, 2026Updated 3 weeks ago
- Software for Ontogenic aNalysis of Antibody Repertoires☆19Sep 25, 2025Updated 5 months ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Jun 12, 2022Updated 3 years ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 7 years ago
- functions and algorithms for single cell RNA-seq analyses☆12Jan 26, 2021Updated 5 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data☆18Nov 26, 2021Updated 4 years ago
- ☆12Oct 23, 2023Updated 2 years ago
- Interactive eQTL visualizations☆14Dec 12, 2022Updated 3 years ago
- ☆20Jun 26, 2025Updated 8 months ago
- Convert TCR gene names☆15Dec 26, 2025Updated 2 months ago
- flexible CDR based distance metrics☆71Dec 16, 2025Updated 2 months ago
- IgSimulator is a versatile tool for simulation of immunoglobulin repertoire☆12Nov 25, 2016Updated 9 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Feb 23, 2026Updated last week