GSEA-MSigDB / ssGSEA-gpmoduleLinks
A GenePattern module for running the ssGSEA method
β13Updated 5 months ago
Alternatives and similar repositories for ssGSEA-gpmodule
Users that are interested in ssGSEA-gpmodule are comparing it to the libraries listed below
Sorting:
- πΆ hlabud: HLA genotype analysis in Rβ16Updated 4 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seqβ31Updated 4 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"β20Updated 6 months ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.β20Updated 4 months ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.β28Updated 2 years ago
- π§ Navigate single-cell RNA-seq datasets in your web browser.β29Updated 2 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicingβ18Updated last year
- The KEGGgraph package to parse KEGG pathways in R into graph objectsβ14Updated 4 months ago
- Explore the cancer relevance of your gene listβ51Updated 6 months ago
- Targeted and non-targeted anticancer drugs and drug regimensβ29Updated 3 weeks ago
- A Snakemake pipeline for quality control and reproducible processing of chromatin profiling dataβ20Updated 4 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment oβ¦β14Updated 2 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Linksβ16Updated 2 years ago
- Read RDS files, in Pythonβ26Updated this week
- Repository for signature genes from Immune Cell Atlasβ18Updated 5 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platformsβ18Updated 2 years ago
- Tutorial for the analysis of scRNA-seq data in Rβ18Updated 7 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expressionβ12Updated 2 years ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRaβ¦β27Updated 4 months ago
- Machine learning use cases for teachingβ13Updated 8 years ago
- A simple, intuitive and Efficient single cell binary Data Storage formatβ15Updated 5 years ago
- Probabilistic gene expression barcodes for cell type annotationβ25Updated 3 years ago
- This is the ensembldb development repository.β35Updated last week
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"β16Updated 6 years ago
- CellAnnβ12Updated last year
- Code used for the single-cell RNA-Seq batch effects paperβ10Updated 7 years ago
- β12Updated last year
- Refining the impact of genetic evidence on clinical successβ26Updated last year
- Toolbox package for organizing and working with TCGA dataβ28Updated last month
- ESTIMATE tumor infiltration, the tidy wayβ16Updated 2 years ago