jinworks / scAB
scAB detects multiresolution cell states with clinical significance
☆16Updated 2 years ago
Alternatives and similar repositories for scAB:
Users that are interested in scAB are comparing it to the libraries listed below
- ☆22Updated last year
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆24Updated 8 months ago
- Hierarchical Cell Annotation☆18Updated 3 months ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆16Updated 2 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- ☆16Updated last year
- Calculating Tumor microenvironment score☆28Updated 2 years ago
- ☆37Updated 2 years ago
- ☆17Updated 11 months ago
- ☆39Updated 11 months ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆14Updated last year
- ☆15Updated last year
- ☆19Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 2 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆28Updated 2 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆29Updated 8 months ago
- Spatial transcriptomics of heart tissue☆20Updated 2 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆17Updated 5 months ago
- ☆26Updated 10 months ago
- ☆18Updated last year
- R code used to analyze single cell PDAC data☆32Updated 7 months ago
- ☆13Updated 7 years ago
- The source code of web server TIP, including example data.☆19Updated 5 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆59Updated 4 months ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆13Updated last year
- An R package for drug response prediction and drug-gene association prediction.☆18Updated 10 months ago
- ☆13Updated last year
- ☆44Updated 5 years ago
- ☆17Updated 4 years ago