hakyimlab / scPrediXcanLinks
☆21Updated this week
Alternatives and similar repositories for scPrediXcan
Users that are interested in scPrediXcan are comparing it to the libraries listed below
Sorting:
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆25Updated this week
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆23Updated 3 years ago
- ☆19Updated last year
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42Updated 7 years ago
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆15Updated 3 weeks ago
- Regional association plots☆25Updated last year
- FLAMES: Accurate gene prioritization in GWAS loci☆35Updated 3 months ago
- GENI plots to visualise results from genome-wide association studies☆27Updated 7 months ago
- A powerful TWAS framework leveraging summary-level reference data☆29Updated 2 months ago
- ☆16Updated 3 months ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆36Updated 8 months ago
- A collection of various utilities for GWAS summary statistics☆27Updated last year
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- Integration of TWAS and Colocalization Analysis☆17Updated 7 months ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆34Updated 3 months ago
- ☆35Updated 4 years ago
- Perform cell-stratified MR analysis through integrating GWAS and QTL data☆26Updated 7 months ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆32Updated 4 years ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 5 years ago
- GWAS genetics Fine-mapping method☆23Updated 7 months ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆33Updated 3 years ago
- ☆27Updated 3 years ago
- An R package for creating ggplot2 based miami plots.☆17Updated 2 months ago
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆50Updated 4 years ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆15Updated 3 years ago
- Collaborative genetic studies of idiopathic pulmonary fibrosis☆17Updated 4 months ago
- Estimate genetic correlation using predicted expression☆22Updated 7 years ago
- Regional association plots☆26Updated last year
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated last year
- MR-link-2: pleiotropy robust cis MR☆16Updated last month