Alternatives and similar repositories for PheWAS-cluster

Users that are interested in PheWAS-cluster are comparing it to the libraries listed below

• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆17Updated 3 years ago
• LizaDarrous / lhcMR
  lhcMR
  ☆26Updated last year
• adriaan-vd-graaf / mrlink2
  MR-link-2: pleiotropy robust cis MR
  ☆20Updated 3 weeks ago
• hailianghuang / FM-summary
  Fine-mapping method only using summary statistics
  ☆20Updated 9 years ago
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆34Updated last year
• jokamoto97 / INTACT
  Integration of TWAS and Colocalization Analysis
  ☆17Updated 10 months ago
• ZhaotongL / cisMRcML
  ☆12Updated last year
• jwr-git / pwcoco
  Pair-wise conditional analysis and colocalisation
  ☆40Updated last year
• MRCIEU / gwasglue2
  Connecting GWAS summary data to analytical tools
  ☆21Updated last year
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆30Updated 10 months ago
• globalbiobankmeta / multi-ancestry-pwmr
  Code for GBMI trans-ancestry proteome Mendelian randomization satellite paper
  ☆18Updated last year
• borangao / MESuSiE
  ☆18Updated 3 weeks ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆28Updated last week
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆22Updated 7 years ago
• jingshuw / GRAPPLE
  An R package for Mendelian Randomization
  ☆38Updated last year
• szcf-weiya / MTWAS
  R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"
  ☆15Updated 2 weeks ago
• dingruofan / xQTLbiolinks
  xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
  ☆37Updated 6 months ago
• opain / Predicting-TWAS-features
  Tool for predicting TWAS features (e.g. gene expression) in a target sample
  ☆16Updated 2 months ago
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆12Updated last year
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated 2 years ago
• zhwm / SharePro_coloc
  An accurate and efficient colocalization method accounting for multiple causal signals
  ☆11Updated last year
• ylaboratory / seismic
  Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
  ☆17Updated 2 months ago
• jrs95 / gassocplot
  Regional association plots
  ☆26Updated last year
• bar-woolf / TwoStepCisMR
  ☆13Updated 2 years ago
• explodecomputer / plinkbinr
  R package that contains plink binaries for windows, mac and linux
  ☆11Updated 5 years ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• jinghuazhao / EWAS-fusion
  Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
  ☆12Updated 2 years ago
• mglev1n / mrSampleOverlap
  Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies
  ☆11Updated 2 years ago
• AndrewsLabUCSF / MR-tutorial
  Tutorial for running Mendelian Randomization analysis using R
  ☆35Updated last year
• YuyingLi-X / HDL-L
  The local version of high-definition likelihood inference of genetic correlations (HDL-L)
  ☆11Updated 2 weeks ago