adriaan-vd-graaf / mrlink2
MR-link 2 is a summary statistics _cis_ MR method that is pleiotropy robust.
☆12Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for mrlink2
- Regional association plots☆25Updated 7 months ago
- An R package for creating ggplot2 based miami plots.☆16Updated 8 months ago
- Pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆18Updated this week
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- Integration of TWAS and Colocalization Analysis☆13Updated 3 weeks ago
- A collection of various utilities for GWAS summary statistics☆26Updated 6 months ago
- GENI plots to visualise results from genome-wide association studies☆21Updated last month
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated last year
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆11Updated 2 years ago
- Tool for predicting TWAS features (e.g. gene expression) in a target sample☆15Updated 3 months ago
- R script that performs gene-set or gene property analysis using TWAS results.☆31Updated 2 months ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Updated last year
- Regional association plots☆25Updated 7 months ago
- This is a pipeline for calculating weights for TWAS☆29Updated 2 years ago
- Create Regional Association Plots☆10Updated 3 months ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆32Updated 4 years ago
- R script for generating functionally informed genetic risk scores from TWAS☆11Updated last year
- Fine-mapping method only using summary statistics☆15Updated 8 years ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆13Updated 3 years ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆19Updated 3 weeks ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆18Updated 2 years ago
- Software to infer latent pleiotropic components from GWAS summary data☆12Updated last month
- R script to make Manhattan-style plot for TWAS☆36Updated 3 years ago
- Estimate genetic correlation using predicted expression☆19Updated 6 years ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated 7 months ago
- Transcriptome-wide association study of Major Depressive Disorder☆12Updated 4 years ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆28Updated 3 months ago
- ☆17Updated 8 months ago
- SCALLOP-INF analysis☆18Updated 2 months ago
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆23Updated 3 years ago