Alternatives and similar repositories for mrlink2:

Users that are interested in mrlink2 are comparing it to the libraries listed below

• mglev1n / mrSampleOverlap
  Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies
  ☆11Updated 2 years ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆27Updated 4 months ago
• jinghuazhao / EWAS-fusion
  Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
  ☆12Updated last year
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated 10 months ago
• opain / Predicting-TWAS-features
  Tool for predicting TWAS features (e.g. gene expression) in a target sample
  ☆15Updated 2 months ago
• jokamoto97 / INTACT
  Integration of TWAS and Colocalization Analysis
  ☆15Updated 3 months ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆21Updated this week
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆14Updated 3 years ago
• opain / Inferred-functional-risk-scoring
  R script for generating functionally informed genetic risk scores from TWAS
  ☆11Updated last year
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆16Updated 11 months ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated last year
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated last year
• genomicsITER / PFgenetics
  Collaborative genetic studies of idiopathic pulmonary fibrosis
  ☆16Updated 2 weeks ago
• RayDebashree / PLACO
  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
  ☆33Updated 2 years ago
• opain / Calculating-FUSION-TWAS-weights-pipeline
  This is a pipeline for calculating weights for TWAS
  ☆30Updated 2 years ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆21Updated 6 years ago
• jrs95 / gassocplot
  Regional association plots
  ☆26Updated 10 months ago
• LizaDarrous / PheWAS-cluster
  ☆19Updated 6 months ago
• opain / TWAS-GSEA
  R script that performs gene-set or gene property analysis using TWAS results.
  ☆31Updated 5 months ago
• hailianghuang / FM-summary
  Fine-mapping method only using summary statistics
  ☆18Updated 8 years ago
• cuelee / pleio
  ☆18Updated 11 months ago
• ylaboratory / seismic
  Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
  ☆14Updated 2 months ago
• borangao / MESuSiE
  ☆17Updated 2 months ago
• MRC-Epid / pGWAS_discovery
  Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
  ☆23Updated 3 years ago
• szcf-weiya / MTWAS
  R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"
  ☆14Updated 7 months ago
• opain / MDD-TWAS
  Transcriptome-wide association study of Major Depressive Disorder
  ☆12Updated 4 years ago
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆11Updated 6 months ago
• hakyimlab / brainxcan
  ☆8Updated 3 weeks ago