dengchunyu / scPagwasLinks
Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data
☆17Updated 7 months ago
Alternatives and similar repositories for scPagwas
Users that are interested in scPagwas are comparing it to the libraries listed below
Sorting:
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- ☆15Updated 2 years ago
- ☆46Updated 3 years ago
- ☆20Updated last year
- ☆17Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆19Updated 2 years ago
- ☆31Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- ☆30Updated 4 months ago
- ☆12Updated last year
- Spatial transcriptomics of heart tissue☆22Updated 3 years ago
- ☆34Updated last year
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated 2 years ago
- ☆21Updated last year
- ☆44Updated 11 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 4 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- Draw phylogenetic trees of tumor evolution☆80Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- ☆37Updated 2 years ago
- ☆9Updated last year
- ☆32Updated 3 years ago
- ☆30Updated 2 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆48Updated 6 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆41Updated 2 years ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆14Updated 9 months ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago