dengchunyu / scPagwasLinks
Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data
☆17Updated last year
Alternatives and similar repositories for scPagwas
Users that are interested in scPagwas are comparing it to the libraries listed below
Sorting:
- ☆15Updated 2 years ago
- ☆47Updated 3 years ago
- single-cell Contamination Detection and Correction☆15Updated 11 months ago
- ☆22Updated 2 years ago
- ☆17Updated 2 years ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆21Updated 2 years ago
- Spatial transcriptomics of heart tissue☆28Updated 3 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆25Updated last year
- ☆31Updated 2 years ago
- ☆32Updated 9 months ago
- ☆53Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- ☆32Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆53Updated 11 months ago
- ☆12Updated last year
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- ☆30Updated 8 months ago
- ☆24Updated 10 months ago
- ☆10Updated last year
- Code for the spatial transcriptomic paper on IPF lungs☆20Updated last year
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆17Updated 2 years ago
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆24Updated last week
- detecting spatial patterns of allele-specific expression☆10Updated last year
- Visualize the results of cell-cell communication analysis☆24Updated 2 years ago
- ☆50Updated 5 years ago
- ☆24Updated 2 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆45Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆81Updated 8 months ago